Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ITG10_RS09840 Genome accession   NZ_CP066149
Coordinates   2160701..2161348 (-) Length   215 a.a.
NCBI ID   WP_248386374.1    Uniprot ID   -
Organism   Vibrio sp. ED004     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2155701..2166348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG10_RS09830 (ITG10_09750) uvrA 2156690..2159521 (-) 2832 WP_017630758.1 excinuclease ABC subunit UvrA -
  ITG10_RS09835 (ITG10_09755) galU 2159671..2160543 (-) 873 WP_017630757.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ITG10_RS09840 (ITG10_09760) qstR 2160701..2161348 (-) 648 WP_248386374.1 LuxR C-terminal-related transcriptional regulator Regulator
  ITG10_RS09845 (ITG10_09765) ssb 2161627..2162181 (+) 555 WP_017630755.1 single-stranded DNA-binding protein Machinery gene
  ITG10_RS09850 (ITG10_09770) csrD 2162343..2164358 (+) 2016 WP_026084233.1 RNase E specificity factor CsrD -
  ITG10_RS09855 (ITG10_09775) - 2164361..2165803 (+) 1443 WP_017630753.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25113.15 Da        Isoelectric Point: 9.2443

>NTDB_id=517885 ITG10_RS09840 WP_248386374.1 2160701..2161348(-) (qstR) [Vibrio sp. ED004]
MRKSRYARTLHFLCIDPSNTYLHVKEIEKHLSIILYKMTPDDLMLVDRKQSNRILLVDYKEVPQLFITCPNLTVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYNTDNKDKIAHGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=517885 ITG10_RS09840 WP_248386374.1 2160701..2161348(-) (qstR) [Vibrio sp. ED004]
ATGAGAAAATCTCGATACGCTCGCACTTTGCATTTTCTGTGCATCGATCCGAGTAACACTTACCTACATGTAAAAGAGAT
AGAAAAACACTTATCCATCATTCTCTACAAAATGACTCCGGACGACTTAATGTTAGTCGACAGAAAGCAGAGTAACCGCA
TCCTGCTTGTCGACTATAAGGAGGTACCACAACTATTTATTACCTGTCCCAACCTGACCGTGATGTGGAAAAACCATGAG
ATCATCTTATTCAATGTTCCACAGCAACTGCCAACTTCGGAGCTTCTTACTTATGGTGTGCTGAAAGGTCTCTTTTATAA
TACAGATAATAAGGACAAGATTGCTCATGGCCTTCAAGAAGTGATTGATGGTGATAACTGGCTGCCAAGAAAAGTAACCA
ATCAACTGCTGTTTTACTACCGTAATATGGTCAATACCAACACAACACCAACCAATGTCGACTTAACCATTCGAGAGATT
CAGGTTATTCGTTGCCTTCAATCCGGCTCATCTAACACACAAATTGCCGATGACTTGTTTATTAGTGAGTTCACGGTCAA
ATCCCATCTCTATCAAATATTCCGTAAGTTAGCAGTTAAAAATAGAGTTCAAGCCATCGCCTGGGCTAACCAGAACCTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.526
  qstR Vibrio campbellii strain DS40M4

52.558

100

0.526
  qstR Vibrio cholerae strain A1552

48.598

99.535

0.484