Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ITG10_RS07605 Genome accession   NZ_CP066149
Coordinates   1682131..1683654 (-) Length   507 a.a.
NCBI ID   WP_017058783.1    Uniprot ID   -
Organism   Vibrio sp. ED004     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1677131..1688654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG10_RS07580 (ITG10_07500) - 1677248..1677511 (+) 264 WP_017631537.1 YihD family protein -
  ITG10_RS07585 (ITG10_07505) ccoG 1677838..1679256 (+) 1419 WP_017631538.1 cytochrome c oxidase accessory protein CcoG -
  ITG10_RS07590 (ITG10_07510) - 1679330..1680316 (+) 987 WP_017631539.1 serine/threonine protein kinase -
  ITG10_RS07595 (ITG10_07515) - 1680372..1680971 (+) 600 WP_017631540.1 thiol:disulfide interchange protein DsbA/DsbL -
  ITG10_RS07600 (ITG10_07520) - 1681111..1682067 (+) 957 WP_017631541.1 DUF2860 domain-containing protein -
  ITG10_RS07605 (ITG10_07525) comM 1682131..1683654 (-) 1524 WP_017058783.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ITG10_RS07610 (ITG10_07530) ilvG 1684127..1685773 (+) 1647 WP_017631542.1 acetolactate synthase 2 catalytic subunit -
  ITG10_RS07615 (ITG10_07535) ilvM 1685775..1686059 (+) 285 WP_017055442.1 acetolactate synthase 2 small subunit -
  ITG10_RS07620 (ITG10_07540) - 1686072..1687040 (+) 969 WP_017631543.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55525.65 Da        Isoelectric Point: 7.6370

>NTDB_id=517881 ITG10_RS07605 WP_017058783.1 1682131..1683654(-) (comM) [Vibrio sp. ED004]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHQADVSVLRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVRQARELMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=517881 ITG10_RS07605 WP_017058783.1 1682131..1683654(-) (comM) [Vibrio sp. ED004]
ATGGGACTCGCGATAATTCATAGTCGAGCTAGTGTGGGTGTAGAGGCTCCAGAAGTGACCGTAGAGGTGCATATCAGCAA
TGGAATGCCCGGTTTTACGTTGGTGGGTTTACCAGAAACAACGGTCAAGGAATCTAAAGATCGAGTGAGAAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCATCCAAAAGAATCACGGTTAACTTAGCTCCTGCAGATTTACCGAAAGAAGGCGGGCGG
TTTGACTTGCCAATCGCGCTTGGGATTTTAGTTGCGTCGGACCAGTTACCCACATCAAAAATAGCTCAACATGAGTTTAT
TGGTGAGCTGGCGCTGTCGGGTGAGTTGCGCTCGGTTAAAGGAGTTCTACCAGCTACATTAGCGGCGGATAGTGTTGAGC
GATGCTTGGTGGTACCTCATCACAATGGCGATCAGGCAGCCCTAGTCGGGAAAGGGGCACATAAGTCTGCACAAACCTTG
TTGGAGGTTTGTGCGGATATGTGTGGTCAGGCTCAGCTTGGTCTATATAGAACGGAACATCATCAGGCTGATGTTTCAGT
GCTTCGCGACCTACAAGATATTATCGGCCAACAACAAGGCAAGCGAGCTCTGGAGATAGCCGCTGCTGGGAACCACAACT
TACTGTTCCTTGGCCCGCCCGGAACAGGCAAGACCATGCTCGCTTCTCGACTGCGTGACTTGCTACCTGAAATGAGTGAT
GACGAGGCGATGGAAACCGCGTCGGTGGCTTCGTTAACGCAACAAGAGATTAATCAATACAACTGGAAGCAACGACCTTT
TCGATCGCCTCACCATTCGAGTTCGATGGCGGCATTGGTGGGTGGTGGTTCGGTACCTCGCCCTGGAGAGATCTCTCTGG
CCCACAATGGCTTACTGTTTCTGGATGAAATGCCCGAATTTGAGCGTAAAGTGCTTGATTCACTGCGAGAGCCACTAGAG
TCGGGCGAGATAATTATTTCGCGCGCGGCGGGTAAGACTCGTTTTCCTGCGCGCTTTCAATTAGTCGGTGCATTGAACCC
TAGCCCGACAGGTTATTACGAGGGAAATCAAGCTCGCGCAAACCCACAGATCATCCTTCGTTACCTCAATCGCTTATCCG
GACCATTGTTGGATAGATTCGATATGTCTTTAGAGATCCCTCTGTTGCCAAAAGGAATGTTAGCCGAAGGTGGCGACCGC
GGTGAAACGACTCAAGTAGTTAAGCAAAGGGTCAGGCAGGCGCGAGAGTTGATGTTATCTCGAAACCATAAATCGAATGC
ACTGTTAGGTAGCCGAGAAATTGAGAAGTATTGCCCATTAAGACGTGAGGATGCTGAGTTTCTGGAAACGGCGTTGCACC
GATTGGGTTTATCGATTCGTGCTTATCATCGAATCATTAAGGTGGCACGAACCATTGCCGACCTTGACGGTAACGAGCAG
ATCGAAAAGAAACATCTATCAGAAGCGCTTGGCTATCGAGCGATGGATCGATTGTTGAAACAACTCACGGCACAAGCTGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.826

100

0.838
  comM Vibrio campbellii strain DS40M4

83.629

100

0.836
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

63.333

100

0.637
  comM Legionella pneumophila str. Paris

48.992

97.83

0.479
  comM Legionella pneumophila strain ERS1305867

48.992

97.83

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.49

99.803

0.424