Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A458_RS40715 Genome accession   NC_018028
Coordinates   4062052..4063548 (+) Length   498 a.a.
NCBI ID   WP_014821770.1    Uniprot ID   I4CY44
Organism   Stutzerimonas stutzeri CCUG 29243     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4057052..4068548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A458_RS40685 (A458_18860) sutA 4057351..4057680 (-) 330 WP_003283413.1 transcriptional regulator SutA -
  A458_RS40690 (A458_18865) - 4057759..4058184 (-) 426 WP_014821767.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  A458_RS40695 (A458_18870) - 4058287..4059537 (-) 1251 WP_014821768.1 ammonium transporter -
  A458_RS40700 (A458_18875) - 4059661..4060977 (-) 1317 WP_041754605.1 ammonium transporter -
  A458_RS40705 (A458_18880) glnK 4061016..4061354 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  A458_RS40710 (A458_18885) - 4061754..4062014 (+) 261 WP_013981620.1 accessory factor UbiK family protein -
  A458_RS40715 (A458_18890) comM 4062052..4063548 (+) 1497 WP_014821770.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A458_RS40720 (A458_18895) - 4063681..4065654 (+) 1974 WP_014821771.1 BCCT family transporter -
  A458_RS40725 (A458_18900) - 4065694..4067331 (-) 1638 WP_014821772.1 putative bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53274.09 Da        Isoelectric Point: 7.7454

>NTDB_id=51779 A458_RS40715 WP_014821770.1 4062052..4063548(+) (comM) [Stutzerimonas stutzeri CCUG 29243]
MSLAIVHSRAQIGVEAPSVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLSIALGILAASGQLPAERLDNLECLGELALSGALRPVQGVLPAALAARAAGRVLLVPRANAEEASLASGLTVYAAEHL
LEVAAHFNGIRPLEPYVAQGLLRQIQPYPDLADVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIHSVASHSPLEHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPNGRCRCTPDQIQRYRNKLSGPLLDRIDLHLTVAREPTALNAPPQT
GQSSAVLADQVAQARQLQLARQGCANAFLDLAGLRSHCQLGTEDQTWLERACERLALSLRAAHRLLKVARTLADLEQAER
ISRQHLAEALQYRPGSQG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=51779 A458_RS40715 WP_014821770.1 4062052..4063548(+) (comM) [Stutzerimonas stutzeri CCUG 29243]
ATGTCCCTGGCCATAGTTCATAGCCGCGCGCAGATTGGCGTCGAAGCGCCGTCAGTGACCGTCGAAGCACATCTGGCCAA
CGGCCTGCCGGCACTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGATCGCGTGCGCAGCGCCATTC
TCACCTCCGGCTTCGATTTTCCCGCTCGACGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCAAAGGACGGCGGCCGC
TTCGACCTGTCCATTGCCCTGGGCATCCTCGCCGCCAGCGGTCAGCTGCCGGCCGAGCGGCTCGACAACCTGGAATGCCT
CGGCGAACTGGCACTGTCCGGCGCCTTGCGCCCGGTCCAGGGAGTCCTGCCGGCTGCCCTCGCCGCTCGAGCGGCAGGGC
GCGTGCTGCTGGTGCCACGGGCCAACGCCGAGGAAGCCAGCCTGGCCTCGGGGCTCACCGTCTATGCCGCCGAGCACTTG
CTCGAGGTCGCTGCGCACTTCAACGGCATCAGGCCGCTCGAACCCTATGTGGCCCAGGGCCTGCTACGACAGATTCAGCC
TTACCCCGACCTGGCCGACGTGCAAGGTCAGCAGGCGGCCAAGCGCGGGCTGCTGATCGCCGCGGCTGGCGCGCACAACC
TGCTGTTTTCCGGCCCGCCAGGCACCGGCAAGACACTCCTGGCCAGCCGCCTGCCCGGTCTCTTGCCACCGCTGGACGAG
CAGGAGGCGCTGGAAGTCGCCGCGATCCATTCGGTGGCCAGTCACAGCCCTCTCGAGCATTGGCCGCAACGGCCCTTTCG
ACAGCCCCATCACAGTGCATCCGGCCCGGCGCTGGTCGGTGGCGGCAGTCGCCCGCAGCCGGGAGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTTCTCGATGAGCTGCCGGAGTTCGACCGCAAGGTGCTCGAGGTCTTGCGTGAACCGCTAGAGTCG
GGGCATATCGTCATCGCTCGGGCCCGCGACAAGGTGCGTTTTCCGGCGCGTTTCCAGCTGGTGGCGGCGATGAATCCCTG
CCCCTGTGGCTACCTCGGTGATCCCAACGGGCGCTGCCGCTGCACGCCGGACCAGATCCAGCGCTATCGCAACAAGCTCT
CCGGCCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTTGCGCGCGAGCCCACGGCCCTCAACGCTCCGCCGCAGACA
GGCCAGAGCAGTGCCGTACTCGCCGACCAGGTAGCCCAGGCGCGGCAGCTGCAACTCGCCCGTCAGGGCTGCGCCAACGC
CTTTCTCGACCTCGCCGGATTGCGCAGCCATTGCCAGCTCGGCACCGAGGATCAGACCTGGCTGGAGCGCGCCTGCGAAC
GCCTGGCGCTGTCGCTGCGCGCAGCGCACCGCCTGCTCAAGGTGGCGCGCACCCTCGCCGATCTGGAACAGGCCGAGCGA
ATCAGCCGCCAGCACCTCGCCGAAGCCCTGCAGTACCGGCCCGGTAGTCAAGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I4CY44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

57.172

99.398

0.568
  comM Glaesserella parasuis strain SC1401

55.777

100

0.562
  comM Vibrio cholerae strain A1552

56.162

99.398

0.558
  comM Haemophilus influenzae Rd KW20

55.489

100

0.558
  comM Legionella pneumophila str. Paris

51.383

100

0.522
  comM Legionella pneumophila strain ERS1305867

51.383

100

0.522
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.47

Multiple sequence alignment