Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | A458_RS38245 | Genome accession | NC_018028 |
| Coordinates | 3552266..3553129 (-) | Length | 287 a.a. |
| NCBI ID | WP_014821360.1 | Uniprot ID | I4CWR0 |
| Organism | Stutzerimonas stutzeri CCUG 29243 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3547266..3558129
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A458_RS38215 (A458_16425) | petA | 3547423..3548016 (-) | 594 | WP_014821354.1 | ubiquinol-cytochrome c reductase iron-sulfur subunit | - |
| A458_RS38220 (A458_16430) | rpsI | 3548274..3548666 (-) | 393 | WP_003302797.1 | 30S ribosomal protein S9 | - |
| A458_RS38225 (A458_16435) | rplM | 3548681..3549109 (-) | 429 | WP_014821355.1 | 50S ribosomal protein L13 | - |
| A458_RS38230 (A458_16440) | - | 3549541..3550578 (+) | 1038 | WP_014821356.1 | NADP(H)-dependent aldo-keto reductase | - |
| A458_RS38235 (A458_16445) | - | 3550641..3551321 (+) | 681 | WP_014821357.1 | energy-coupling factor ABC transporter permease | - |
| A458_RS44570 (A458_16450) | yacG | 3551332..3551529 (-) | 198 | WP_014821358.1 | DNA gyrase inhibitor YacG | - |
| A458_RS38240 (A458_16455) | coaE | 3551526..3552134 (-) | 609 | WP_014821359.1 | dephospho-CoA kinase | - |
| A458_RS38245 (A458_16460) | pilD | 3552266..3553129 (-) | 864 | WP_014821360.1 | prepilin peptidase | Machinery gene |
| A458_RS38250 (A458_16465) | pilC | 3553135..3554355 (-) | 1221 | WP_014821361.1 | type II secretion system F family protein | Machinery gene |
| A458_RS38255 (A458_16470) | pilB | 3554358..3556061 (-) | 1704 | WP_014821362.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| A458_RS45270 (A458_16475) | pilA | 3556402..3556587 (+) | 186 | WP_014821363.1 | type IV pilin protein | Machinery gene |
| A458_RS38265 (A458_16480) | - | 3556608..3557042 (+) | 435 | WP_014821364.1 | hypothetical protein | - |
| A458_RS38270 (A458_16485) | - | 3557108..3557908 (+) | 801 | WP_014821365.1 | ABC transporter permease subunit | - |
Sequence
Protein
Download Length: 287 a.a. Molecular weight: 32067.99 Da Isoelectric Point: 7.3240
>NTDB_id=51771 A458_RS38245 WP_014821360.1 3552266..3553129(-) (pilD) [Stutzerimonas stutzeri CCUG 29243]
MSTFLASHVLAFVLSVALLGLLVGSFLNVVIYRLPVMMQREWRAQALEYLECPPEPVRERFNLLLPNSRCPHCDHQIRSW
ENIPLVSWLALRGKCSSCRAPISSRYPLVELACGLLSGYVAWHFGFTWQAGAMLLLTWGLVAMSMIDIDHQLLPDSLVLP
LLWLGLILNNFGLFVSLESALWGAVAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVIPLTILLSSVVGAV
LGTILLRVQRAESSTPIPFGPYLAIAGWIALLWGDWITESYLHFARF
MSTFLASHVLAFVLSVALLGLLVGSFLNVVIYRLPVMMQREWRAQALEYLECPPEPVRERFNLLLPNSRCPHCDHQIRSW
ENIPLVSWLALRGKCSSCRAPISSRYPLVELACGLLSGYVAWHFGFTWQAGAMLLLTWGLVAMSMIDIDHQLLPDSLVLP
LLWLGLILNNFGLFVSLESALWGAVAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVIPLTILLSSVVGAV
LGTILLRVQRAESSTPIPFGPYLAIAGWIALLWGDWITESYLHFARF
Nucleotide
Download Length: 864 bp
>NTDB_id=51771 A458_RS38245 WP_014821360.1 3552266..3553129(-) (pilD) [Stutzerimonas stutzeri CCUG 29243]
ATGTCTACATTCTTGGCCAGCCACGTGCTGGCCTTTGTTTTGTCTGTTGCTCTACTGGGTCTGCTGGTCGGCAGCTTCCT
CAATGTCGTGATCTATCGCCTGCCGGTCATGATGCAGCGTGAGTGGCGTGCGCAGGCTCTTGAGTATCTCGAGTGCCCAC
CGGAGCCGGTCCGTGAGCGCTTCAATCTGCTCCTACCAAACTCGCGGTGTCCACACTGTGATCACCAGATTCGCTCTTGG
GAGAATATCCCCTTGGTCAGCTGGCTGGCCTTGCGTGGCAAGTGCTCGTCCTGCCGGGCGCCGATCAGCAGTCGCTATCC
CCTTGTGGAGTTGGCGTGCGGCCTGCTTTCTGGCTATGTCGCCTGGCATTTCGGTTTCACCTGGCAGGCAGGAGCAATGC
TGTTGCTGACCTGGGGATTGGTGGCGATGAGCATGATCGATATCGATCATCAGTTGCTGCCCGATTCGCTGGTTCTGCCG
CTGTTGTGGCTTGGCCTCATCCTGAACAACTTCGGTTTGTTCGTATCGCTTGAAAGTGCACTGTGGGGAGCGGTAGCGGG
ATATCTGAGCCTGTGGTCGGTTTATTGGCTGTTCAAGCTGGTCACCGGCAAAGAAGGTATGGGCTATGGCGATTTCAAAC
TGCTTGCGATGTTAGGAGCTTGGGGGGGGTGGCAGGTGATACCACTTACCATCCTATTGTCGTCGGTGGTTGGGGCTGTT
CTTGGCACAATCCTGTTGCGGGTGCAGCGCGCCGAGAGCAGCACGCCCATCCCTTTCGGTCCCTACTTGGCGATCGCCGG
CTGGATCGCGTTGCTTTGGGGTGACTGGATTACCGAGAGCTATCTCCATTTCGCGCGCTTTTAA
ATGTCTACATTCTTGGCCAGCCACGTGCTGGCCTTTGTTTTGTCTGTTGCTCTACTGGGTCTGCTGGTCGGCAGCTTCCT
CAATGTCGTGATCTATCGCCTGCCGGTCATGATGCAGCGTGAGTGGCGTGCGCAGGCTCTTGAGTATCTCGAGTGCCCAC
CGGAGCCGGTCCGTGAGCGCTTCAATCTGCTCCTACCAAACTCGCGGTGTCCACACTGTGATCACCAGATTCGCTCTTGG
GAGAATATCCCCTTGGTCAGCTGGCTGGCCTTGCGTGGCAAGTGCTCGTCCTGCCGGGCGCCGATCAGCAGTCGCTATCC
CCTTGTGGAGTTGGCGTGCGGCCTGCTTTCTGGCTATGTCGCCTGGCATTTCGGTTTCACCTGGCAGGCAGGAGCAATGC
TGTTGCTGACCTGGGGATTGGTGGCGATGAGCATGATCGATATCGATCATCAGTTGCTGCCCGATTCGCTGGTTCTGCCG
CTGTTGTGGCTTGGCCTCATCCTGAACAACTTCGGTTTGTTCGTATCGCTTGAAAGTGCACTGTGGGGAGCGGTAGCGGG
ATATCTGAGCCTGTGGTCGGTTTATTGGCTGTTCAAGCTGGTCACCGGCAAAGAAGGTATGGGCTATGGCGATTTCAAAC
TGCTTGCGATGTTAGGAGCTTGGGGGGGGTGGCAGGTGATACCACTTACCATCCTATTGTCGTCGGTGGTTGGGGCTGTT
CTTGGCACAATCCTGTTGCGGGTGCAGCGCGCCGAGAGCAGCACGCCCATCCCTTTCGGTCCCTACTTGGCGATCGCCGG
CTGGATCGCGTTGCTTTGGGGTGACTGGATTACCGAGAGCTATCTCCATTTCGCGCGCTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
58.696 |
96.167 |
0.564 |
| pilD | Vibrio campbellii strain DS40M4 |
55.678 |
95.122 |
0.53 |
| pilD | Acinetobacter baumannii D1279779 |
51.957 |
97.909 |
0.509 |
| pilD | Acinetobacter nosocomialis M2 |
51.957 |
97.909 |
0.509 |
| pilD | Neisseria gonorrhoeae MS11 |
53.462 |
90.592 |
0.484 |