Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   JC622_RS03455 Genome accession   NZ_CP066125
Coordinates   722981..723301 (-) Length   106 a.a.
NCBI ID   WP_227095847.1    Uniprot ID   -
Organism   Aeromonas veronii strain 32286     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 717981..728301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC622_RS03435 - 718376..719074 (-) 699 WP_005349201.1 DnaT-like ssDNA-binding domain-containing protein -
  JC622_RS03440 - 719315..720286 (+) 972 WP_227095846.1 response regulator -
  JC622_RS03445 - 720361..721759 (-) 1399 Protein_649 peptide MFS transporter -
  JC622_RS03450 galU 721973..722884 (-) 912 WP_005339121.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  JC622_RS03455 comE1/comEA 722981..723301 (-) 321 WP_227095847.1 ComEA family DNA-binding protein Machinery gene
  JC622_RS03460 pta 723679..725859 (-) 2181 WP_005339119.1 phosphate acetyltransferase -
  JC622_RS03465 - 725914..727116 (-) 1203 WP_227095848.1 acetate kinase -
  JC622_RS03470 yfbV 727421..727861 (+) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11264.25 Da        Isoelectric Point: 9.6564

>NTDB_id=517609 JC622_RS03455 WP_227095847.1 722981..723301(-) (comE1/comEA) [Aeromonas veronii strain 32286]
MLIKKLSAVMLLACLPLLSQPVLAADKAAPKQTTTAEVAKETSKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=517609 JC622_RS03455 WP_227095847.1 722981..723301(-) (comE1/comEA) [Aeromonas veronii strain 32286]
ATGCTGATAAAGAAGCTCTCTGCAGTCATGCTGCTGGCCTGCTTGCCACTGTTAAGCCAACCTGTGCTGGCCGCAGATAA
GGCAGCACCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAGACCAGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACCCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

48.624

100

0.5
  comEA/comE1 Glaesserella parasuis strain SC1401

44.248

100

0.472
  comEA Vibrio cholerae C6706

47.573

97.17

0.462
  comEA Vibrio cholerae strain A1552

47.573

97.17

0.462
  comEA Vibrio parahaemolyticus RIMD 2210633

44.33

91.509

0.406