Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JC622_RS00550 Genome accession   NZ_CP066125
Coordinates   114792..116306 (-) Length   504 a.a.
NCBI ID   WP_227095637.1    Uniprot ID   -
Organism   Aeromonas veronii strain 32286     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 109792..121306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC622_RS00525 - 111006..111641 (-) 636 WP_005357452.1 nicotinamidase -
  JC622_RS00530 - 111716..112366 (+) 651 WP_111900980.1 NrtR DNA-binding winged helix domain-containing protein -
  JC622_RS00535 - 112363..112869 (+) 507 WP_227095634.1 DUF523 domain-containing protein -
  JC622_RS00540 - 112794..113759 (-) 966 WP_227095635.1 acyltransferase -
  JC622_RS00545 - 113766..114665 (-) 900 WP_227095636.1 acyltransferase -
  JC622_RS00550 comM 114792..116306 (-) 1515 WP_227095637.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JC622_RS00555 ilvG 116691..118337 (+) 1647 WP_227095638.1 acetolactate synthase 2 catalytic subunit -
  JC622_RS00560 ilvM 118334..118612 (+) 279 WP_005339613.1 acetolactate synthase 2 small subunit -
  JC622_RS00565 - 118625..119569 (+) 945 WP_219594863.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54574.51 Da        Isoelectric Point: 7.4493

>NTDB_id=517603 JC622_RS00550 WP_227095637.1 114792..116306(-) (comM) [Aeromonas veronii strain 32286]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQIMRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSLQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSVQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQSAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=517603 JC622_RS00550 WP_227095637.1 114792..116306(-) (comM) [Aeromonas veronii strain 32286]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGAGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCTCCCGCCGATCTACCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCCATCGGCATTCTCGCTGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCATGAATTTTT
GGGGGAATTGGCCCTGACCGGCGAAATTCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGAC
GCACCTTGCTGGTACCGCGGGAGAACGGCCCGGAAGCCTCTCTCATTCAGGATGCCGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAGTACGAACTACCACTGCCAGATCCCCAAAGCGCGGAGAGCCTGCCAGATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACTGGCAAGAGCATGCTGGCGAGCCGACTGCCCGGCATCTTGCCGCCGCTGAGCGAGCAG
GAAGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCACGCGCCGGCCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCGGCGGTGGCGCTGGTGGGTGGTGGCAGCCACCCGCGGCCCGGCGAAATATCGTTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAACTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCTTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTCCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAATCCAAG
CCCCTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCATGCGCTACCTCGGCAAACTCTCCGGCC
CCTTTCTCGACCGCTTTGACCTGACGGTGGAGGTACCGCTGCTGCCCAAGGGGAGCCTCACCGGCAAGGCGGAGCGAGGG
GAGTCTAGCCTGCAGATCCGCGATCGAGTGCTGGCGGCACGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCGGTGCAAGATGCCGAATTTTTGGAGAATGCCATCCAGAAGC
TGGGGCTCAGTATCCGGGCCTGGCACCGCATCCTGCGGGTGTCGCGCACCATCGCCGATCTGGCCGGGCAATCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACCGGCTGCTATCGCGATTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Glaesserella parasuis strain SC1401

61.144

100

0.615
  comM Vibrio campbellii strain DS40M4

61.753

99.603

0.615
  comM Legionella pneumophila str. Paris

51.19

100

0.512
  comM Legionella pneumophila strain ERS1305867

51.19

100

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464