Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   JC624_RS18455 Genome accession   NZ_CP066124
Coordinates   3838662..3839795 (+) Length   377 a.a.
NCBI ID   WP_068564479.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 32292     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3833662..3844795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC624_RS18430 - 3833951..3834157 (-) 207 WP_005072046.1 hypothetical protein -
  JC624_RS18435 oprC 3834211..3836292 (-) 2082 WP_227062325.1 TonB-dependent copper receptor -
  JC624_RS18440 - 3836365..3836790 (-) 426 WP_002114087.1 DUF2946 family protein -
  JC624_RS18445 def 3836834..3837364 (-) 531 WP_002114101.1 peptide deformylase -
  JC624_RS18450 tsaP 3837487..3838641 (+) 1155 WP_068564394.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  JC624_RS18455 dprA 3838662..3839795 (+) 1134 WP_068564479.1 DNA-processing protein DprA Machinery gene
  JC624_RS18460 yrdC 3839847..3840416 (+) 570 WP_005072030.1 L-threonylcarbamoyladenylate synthase -
  JC624_RS18465 - 3840809..3841729 (-) 921 WP_081309703.1 DMT family transporter -
  JC624_RS18470 - 3841833..3842486 (-) 654 WP_081309704.1 TetR/AcrR family transcriptional regulator -
  JC624_RS18475 nepI 3842622..3843836 (+) 1215 WP_068564400.1 MFS transporter -
  JC624_RS18480 - 3843858..3844622 (+) 765 WP_063097939.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41846.40 Da        Isoelectric Point: 6.6176

>NTDB_id=517599 JC624_RS18455 WP_068564479.1 3838662..3839795(+) (dprA) [Acinetobacter pittii strain 32292]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIVDYFGNCEKAVQPASLAQWSNLGLHANHLKRVDEFQTAQGQAQFEKLVQQV
HQHTDFILTADDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNFTEEAIVSSTPEI
PEHLINLYQSLDWVGQNIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=517599 JC624_RS18455 WP_068564479.1 3838662..3839795(+) (dprA) [Acinetobacter pittii strain 32292]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAACTGCGAAAAGGCAGTCCAACCAGCTAGTTTGGCACAGTGGTCAAATCTTGGCTTAC
ACGCTAATCATTTAAAACGCGTAGATGAATTTCAAACTGCTCAGGGTCAAGCTCAGTTTGAAAAACTGGTTCAACAGGTC
CATCAGCATACCGACTTTATTTTAACAGCAGATGACTCAGGCTATCCCACTCAGCTATTACCTTATACAGATCACCCACC
TATCATTTTTGGAAAAGGTCAGGCACAAGCCTTATTGCAACCGCAAATTGCGATTGTAGGTAGCCGAAAACCAAGCCCCC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTATTACTTAAGTGAAAAAGGTTTTTATGTGAGTAGTGGCTTGGCATATGGC
ATTGATGAAGCTGCTCACCAAGGAGCTTCAGCTCATCAACGTACGATTGCTGTGACAGGAACCGGTTTAGACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAATGGCGCGATTATTACTGAATTTTTGCCTGGAACAC
CCCCATTACAGCAGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTGTTAGTGGTAGAAGCTACC
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCCGAACAAGGTAAGACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGCTTTACCCACTCAGTGGCAAAGTCAGCAACAAAACTTCACCGAGGAGGCTATAGTTTCTAGTACCCCAGAAATT
CCTGAGCATTTAATTAACCTTTATCAATCTTTAGACTGGGTCGGACAAAATATTGATCAGCTTGTCTTACATCACTCTCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

92.838

100

0.928

  dprA Acinetobacter baumannii strain A118

92.308

100

0.923

  dprA Acinetobacter baylyi ADP1

70.341

100

0.711

  dprA Vibrio cholerae strain A1552

43.844

88.329

0.387

  dprA Vibrio campbellii strain DS40M4

40.588

90.186

0.366