Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   JC624_RS18450 Genome accession   NZ_CP066124
Coordinates   3837487..3838641 (+) Length   384 a.a.
NCBI ID   WP_068564394.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 32292     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3832487..3843641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC624_RS18425 - 3832669..3833883 (+) 1215 WP_068564390.1 oxygenase MpaB family protein -
  JC624_RS18430 - 3833951..3834157 (-) 207 WP_005072046.1 hypothetical protein -
  JC624_RS18435 oprC 3834211..3836292 (-) 2082 WP_227062325.1 TonB-dependent copper receptor -
  JC624_RS18440 - 3836365..3836790 (-) 426 WP_002114087.1 DUF2946 family protein -
  JC624_RS18445 def 3836834..3837364 (-) 531 WP_002114101.1 peptide deformylase -
  JC624_RS18450 tsaP 3837487..3838641 (+) 1155 WP_068564394.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  JC624_RS18455 dprA 3838662..3839795 (+) 1134 WP_068564479.1 DNA-processing protein DprA Machinery gene
  JC624_RS18460 yrdC 3839847..3840416 (+) 570 WP_005072030.1 L-threonylcarbamoyladenylate synthase -
  JC624_RS18465 - 3840809..3841729 (-) 921 WP_081309703.1 DMT family transporter -
  JC624_RS18470 - 3841833..3842486 (-) 654 WP_081309704.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42600.44 Da        Isoelectric Point: 7.0715

>NTDB_id=517598 JC624_RS18450 WP_068564394.1 3837487..3838641(+) (tsaP) [Acinetobacter pittii strain 32292]
MKKVFDGMVQFHALGIKKHLLALALFTGVAFSTVAETYAASPNHNPPSLRSNAPHVYIVKRGDTLWDISGHFLSKPWRWP
EIWANNQHVKNPHWIYPGDRLLLCSLDGSPLVGKDEGDGCVGIIRRYTGQMTNLQPQVRVESLNNNVPVIPLEHIKQWLE
HSTILPIDAIQHTPYVVGTADQRVLAAKGQTIYARGQGLIDGQRYAVYREGEPYYFTDNKGKKHSLGIELQQVASGIAIS
SEKDITTLELTDSYNSEVRRGDRVMPEEEATLPTLFYPVDATQVTDGGKIIRVMGSIGTAAKNSVVTLDRGTAQGIQVGQ
VFDITQQGETIRDPKTKEPIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPVKVGSSIQPPRFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=517598 JC624_RS18450 WP_068564394.1 3837487..3838641(+) (tsaP) [Acinetobacter pittii strain 32292]
ATGAAAAAGGTTTTTGACGGCATGGTTCAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTGGCACTTTTTAC
AGGGGTTGCATTCAGTACGGTAGCAGAGACTTATGCTGCTAGTCCGAACCATAATCCACCCTCTCTTAGAAGTAATGCAC
CACATGTCTACATAGTAAAACGAGGAGATACGCTATGGGATATTTCTGGTCACTTTCTGAGTAAACCTTGGCGCTGGCCT
GAAATTTGGGCAAATAATCAGCATGTCAAAAATCCACACTGGATTTATCCTGGTGATCGATTACTGCTGTGTAGTTTAGA
TGGCAGTCCATTGGTTGGAAAAGATGAAGGAGATGGCTGTGTCGGCATTATTCGCCGTTACACAGGCCAAATGACAAATT
TACAACCTCAAGTTCGTGTGGAGTCACTTAACAATAACGTACCTGTTATTCCTCTTGAACATATCAAACAATGGTTAGAA
CACAGCACTATTCTACCTATCGATGCAATTCAACATACTCCTTATGTAGTCGGTACTGCCGATCAACGTGTACTGGCGGC
AAAAGGTCAAACTATTTATGCGCGCGGACAAGGTTTAATTGATGGTCAACGTTATGCAGTTTATCGTGAAGGTGAACCTT
ATTATTTCACCGATAATAAAGGCAAAAAGCACAGTCTAGGTATTGAGCTACAACAAGTTGCCTCAGGGATTGCGATCTCT
TCTGAAAAAGACATTACCACGCTTGAGTTAACTGATAGCTACAATTCTGAAGTACGTCGTGGTGATCGGGTGATGCCAGA
AGAAGAAGCAACATTACCTACTTTGTTTTATCCAGTGGATGCCACTCAGGTGACAGATGGAGGCAAAATTATTCGTGTAA
TGGGATCAATTGGTACTGCTGCCAAAAATAGTGTGGTGACTTTGGACCGAGGTACAGCACAAGGTATCCAAGTAGGACAA
GTTTTTGATATTACGCAACAAGGTGAAACCATTCGAGATCCTAAAACCAAAGAACCAATACAGTTACCAGGACAACAAAT
TGGTAGTTTGATGGTCTTTAGAACTTTTGATCAGTTGAGTTATGCCTACGTATTAGAAAGCGATTTACCAGTTAAAGTTG
GTTCAAGCATTCAGCCACCCCGCTTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

89.583

100

0.896