NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	JC624_RS18240	Genome accession	NZ_CP066124
Coordinates	3794169..3795656 (+)	Length	495 a.a.
NCBI ID	WP_069036335.1	Uniprot ID	-
Organism	Acinetobacter pittii strain 32292
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 3789169..3800656

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JC624_RS18215	ribD	3790090..3791175 (-)	1086	WP_227062303.1	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	-
JC624_RS18220	nrdR	3791191..3791649 (-)	459	WP_000543541.1	transcriptional regulator NrdR	-
JC624_RS18225	amtB	3791807..3793201 (-)	1395	WP_227062305.1	ammonium transporter	-
JC624_RS18230	glnK	3793259..3793597 (-)	339	WP_000780326.1	P-II family nitrogen regulator	-
JC624_RS18235	-	3793876..3794103 (+)	228	WP_002121136.1	accessory factor UbiK family protein	-
JC624_RS18240	comM	3794169..3795656 (+)	1488	WP_069036335.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
JC624_RS18245	-	3795671..3797104 (-)	1434	WP_227062307.1	PLP-dependent aminotransferase family protein	-
JC624_RS18250	-	3797216..3797992 (+)	777	WP_227062309.1	aldolase	-
JC624_RS18255	-	3798008..3798886 (+)	879	WP_227062310.1	dihydrodipicolinate synthase family protein	-
JC624_RS18260	-	3798928..3799749 (-)	822	WP_033851261.1	TorF family putative porin	-
JC624_RS18265	-	3799788..3799976 (-)	189	WP_033851263.1	hypothetical protein	-

Sequence

Protein

Download Length: 495 a.a. Molecular weight: 54484.55 Da Isoelectric Point: 7.3646

                                >NTDB_id=517597 JC624_RS18240 WP_069036335.1 3794169..3795656(+) (comM) [Acinetobacter pittii strain 32292]

MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR

LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL

KEVCDHFLGMKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN

QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE

IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE

DSTAVRQRVIYAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ

SPHLTEALSYRGNHS

Nucleotide

Download Length: 1488 bp

                                >NTDB_id=517597 JC624_RS18240 WP_069036335.1 3794169..3795656(+) (comM) [Acinetobacter pittii strain 32292]

ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTCTGATTGAAGTTGAGGTACATGTGAGTCA

AGGCTTACCTTCTCTTACCATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGCGTTCGCTCAGCCATTA

TTAATAGTGGATTTCAATTTCCAACAAAACGGCTGACCATTAATCTTGCACCAGCAGATCTGCCCAAAGATGGATCACGT

CTAGATTTACCTATTGCTATAGGTATTTTAATTGCTTCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT

TGGTGAATTAGCTTTAGATGGCCATGTAAGGCCAGTGTCAGGCACTTTAACTTTGGCAATGGCATGTCAACAGGCCAAGC

ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA

AAAGAAGTTTGTGATCATTTCTTGGGCATGAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA

TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC

TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCGTCACGCCTTCCTTCAATTTTGCCACCGCTTTCTAAT

CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGTCAGCGTCCATTTCGCGCGCC

CCACCATACAGCATCAGCGATTGCACTAGTTGGGGGCGGTTCACATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG

GGGTTTTGTTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAGGTCTTACGTCAGCCGCTTGAGTCAAAAGAA

ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG

TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATCAAGCGCTATCAAAACCGTATATCGGGAC

CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAAGAACTGCAAGATCCAACGCCTGCTGAA

GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT

TTCACCCAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCACAACAACGTTTGA

ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGAGTAGCTCGTACCATTGCCGATTTGGCTCAAAGTGAGATGATCCAA

AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	50.806	100	0.509
comM	Glaesserella parasuis strain SC1401	50.1	100	0.505
comM	Legionella pneumophila str. Paris	49.398	100	0.497
comM	Legionella pneumophila strain ERS1305867	49.398	100	0.497
comM	Haemophilus influenzae Rd KW20	48.898	100	0.493
comM	Vibrio campbellii strain DS40M4	47.677	100	0.477
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.123	100	0.469

Detailed information NTG0517597