Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I9190_RS19935 Genome accession   NZ_CP066121
Coordinates   4303932..4305419 (+) Length   495 a.a.
NCBI ID   WP_151781281.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain GD0320     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4298932..4310419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9190_RS19910 (I9190_19910) ribD 4299762..4300874 (-) 1113 WP_005034444.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  I9190_RS19915 (I9190_19915) nrdR 4300907..4301371 (-) 465 WP_004825545.1 transcriptional regulator NrdR -
  I9190_RS19920 (I9190_19920) amt 4301532..4302935 (-) 1404 WP_151781282.1 ammonium transporter -
  I9190_RS19925 (I9190_19925) glnK 4303003..4303341 (-) 339 WP_004725283.1 P-II family nitrogen regulator -
  I9190_RS19930 (I9190_19930) - 4303633..4303860 (+) 228 WP_004825547.1 accessory factor UbiK family protein -
  I9190_RS19935 (I9190_19935) comM 4303932..4305419 (+) 1488 WP_151781281.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I9190_RS19940 (I9190_19940) - 4305457..4306323 (-) 867 WP_046759773.1 hypothetical protein -
  I9190_RS19945 (I9190_19945) - 4306333..4307151 (-) 819 WP_046759772.1 Tox-REase-5 domain-containing protein -
  I9190_RS19950 (I9190_19950) - 4307151..4307537 (-) 387 WP_058968269.1 hypothetical protein -
  I9190_RS19955 (I9190_19955) - 4307530..4307994 (-) 465 WP_046759770.1 DUF4123 domain-containing protein -
  I9190_RS22485 (I9190_19960) - 4307999..4308205 (-) 207 WP_046759769.1 hypothetical protein -
  I9190_RS19965 (I9190_19965) - 4308278..4308916 (+) 639 WP_046759768.1 hypothetical protein -
  I9190_RS19970 (I9190_19970) - 4309042..4309551 (+) 510 WP_046759778.1 GNAT family N-acetyltransferase -
  I9190_RS19975 (I9190_19975) - 4309611..4310381 (-) 771 WP_058968267.1 TorF family putative porin -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54501.60 Da        Isoelectric Point: 7.8412

>NTDB_id=517535 I9190_RS19935 WP_151781281.1 4303932..4305419(+) (comM) [Acinetobacter bereziniae strain GD0320]
MSLAKIYTRGLLGLHAPLIEVEVHVSAGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIATGQLPENVTDDFEFIGELALDGHLRPVTGTLTIAMACQLAKHQLMLPQENADEAAQLPEFKVFAAHHL
KQVCDHFLNTQKIEVTSTQKSTLDKQYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPALNP
QENLEVASIYSIANTQHHFGQRPFRAPHHTASAIALVGGGSNPKPGEITLAHLGVLFLDELPEFDKKVLEVLRQPLESKE
IIISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAESIKRYQSRISGPLLDRIDLHIDVPPLKAQELQDTTPVE
DSATVRERVLQAFHFQIQRQGGLNHALSPKQLEKYVVLDETSQKMIEMAQQRLNLSARAYHRILRVSRTIADLAQSEQIQ
STHLTEALSYRGTHN

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=517535 I9190_RS19935 WP_151781281.1 4303932..4305419(+) (comM) [Acinetobacter bereziniae strain GD0320]
ATGTCTTTAGCCAAAATTTATACACGAGGCTTACTTGGATTGCATGCACCTTTAATTGAAGTAGAGGTCCATGTTAGTGC
AGGACTACCTTCTTTAACAATTGTTGGTTTGGCAGAAGCAGCCGTTCGTGAAAGTAAGGATCGTGTCCGCTCTGCAATCA
TCAATAGTGGTTTTCAGTTTCCAACCAAACGCTTGACCATCAATCTGGCACCTGCGGACCTTCCTAAAGATGGCTCTCGC
TTAGATCTTCCGATTGCATTAGGAATTCTGATTGCGACAGGTCAACTCCCTGAGAATGTCACAGACGATTTCGAGTTTAT
TGGTGAGTTAGCACTGGATGGTCATTTAAGACCTGTTACAGGCACATTAACGATTGCAATGGCTTGTCAATTGGCAAAGC
ACCAATTGATGCTTCCTCAAGAAAATGCTGATGAAGCCGCACAATTACCCGAATTCAAGGTATTTGCTGCACATCATTTA
AAACAAGTCTGTGATCATTTTTTAAATACACAAAAAATTGAAGTAACCTCCACACAAAAATCTACTTTGGACAAACAATA
TAAATTTGATTTGGCTGATGTAAAAGGTCAGTTACGCCCTCGAAGAGCTCTAGAAATTGCCGCTGCAGGTGGGCACTCGC
TTTTATTTAAAGGACCACCAGGAACAGGTAAAACACTTTTAGCTTCACGTTTACCTAGTATTTTGCCTGCATTGAATCCA
CAAGAAAATCTCGAAGTCGCCAGTATTTATTCCATTGCCAACACTCAACACCACTTTGGGCAGCGACCTTTTCGAGCACC
TCATCATACTGCTTCTGCAATTGCCTTGGTGGGAGGTGGATCGAACCCGAAACCCGGAGAAATTACACTTGCGCATTTAG
GGGTACTTTTCTTGGATGAATTACCCGAGTTTGATAAGAAAGTCCTAGAAGTTTTAAGGCAACCCCTTGAGTCTAAAGAA
ATCATCATTTCAAGAGCATCAAGACAAATTACCTTTCCAGCAAATTTTCAACTCATCGCAGCAATGAATCCATGTCCTTG
TGGTTATGCTTTTAATCAAGATAGCCGTTGCCAGTGTTCAGCTGAATCAATCAAACGTTATCAAAGTCGAATCTCAGGTC
CTTTATTGGATCGTATTGATCTACATATCGATGTACCACCATTAAAAGCTCAAGAATTACAAGATACAACTCCTGTTGAA
GATTCAGCAACAGTACGAGAACGCGTACTTCAAGCTTTTCATTTTCAAATTCAACGCCAAGGCGGATTAAATCACGCTTT
ATCTCCAAAACAGTTGGAAAAATATGTAGTTTTGGATGAAACATCCCAAAAGATGATTGAGATGGCACAACAACGTTTAA
ATTTATCTGCACGGGCATATCACCGTATTTTACGTGTTTCAAGGACCATTGCAGATTTAGCACAAAGTGAACAAATTCAA
AGTACACATTTGACAGAAGCTTTGTCTTATCGGGGAACGCACAATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.2

100

0.517
  comM Glaesserella parasuis strain SC1401

50.701

100

0.511
  comM Vibrio cholerae strain A1552

50.505

100

0.505
  comM Vibrio campbellii strain DS40M4

50.303

100

0.503
  comM Legionella pneumophila str. Paris

49.597

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.597

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.215

100

0.469