Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   I6I02_RS02265 Genome accession   NZ_CP066093
Coordinates   454911..456881 (+) Length   656 a.a.
NCBI ID   WP_198463710.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 449911..461881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS02240 (I6I02_02240) - 450628..451203 (-) 576 WP_002886838.1 CYTH domain-containing protein -
  I6I02_RS02245 (I6I02_02245) - 451299..451973 (+) 675 WP_175064879.1 GTP pyrophosphokinase family protein -
  I6I02_RS02250 (I6I02_02250) - 451945..452781 (+) 837 WP_198463709.1 NAD kinase -
  I6I02_RS02255 (I6I02_02255) - 452778..453674 (+) 897 WP_013990221.1 RluA family pseudouridine synthase -
  I6I02_RS02260 (I6I02_02260) pta 453690..454674 (+) 985 Protein_446 phosphate acetyltransferase -
  I6I02_RS02265 (I6I02_02265) amiA 454911..456881 (+) 1971 WP_198463710.1 peptide ABC transporter substrate-binding protein Regulator
  I6I02_RS02270 (I6I02_02270) amiA3 457062..459032 (+) 1971 WP_198463711.1 peptide ABC transporter substrate-binding protein Regulator
  I6I02_RS02275 (I6I02_02275) amiC 459093..460586 (+) 1494 WP_002886845.1 ABC transporter permease Regulator
  I6I02_RS02280 (I6I02_02280) amiD 460586..461512 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71952.88 Da        Isoelectric Point: 4.9751

>NTDB_id=517344 I6I02_RS02265 WP_198463710.1 454911..456881(+) (amiA) [Streptococcus salivarius strain FDAARGOS_1045]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYGYIYNSDPETLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADSKAGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDHTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQEAQERSFSDGALSIARVFPMSSNYASVEKKYKDNIYYTAPGASTAAIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQVNGKDGAALALRNLFVPSDFVSAGDKTFGDLVTEKMSTYGDEWSGVNF
ADGQDGLYNAEKAKTEFAKAKESLQGEGVQFPIHLDLPVDQSSKLNVAQAQSLKQTIEKSLGSENVVIDINQLSSDDMQN
ATLNAANAAAEDWDISNGVVWGPDYQDPSTYLDIFKTTSSENTKTFMSYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=517344 I6I02_RS02265 WP_198463710.1 454911..456881(+) (amiA) [Streptococcus salivarius strain FDAARGOS_1045]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTGGCACTCCTCAGTGTAGGTGCCTTAGCGGCTTGTTCATCTAAGTC
AAGCACTAGTGGAACGACTTATGGTTATATTTATAACTCAGATCCTGAAACATTGGACTATATCACGTCAAATACTGGAC
CTACTAAGACTGCTGTAACTAATGGTGTAGATGGTCTTATGGAAGCTGATAAATATGGGAACCTTGTTCCTTCTGTAGCT
GAAGATTGGTCAGTTTCTCAAGATGGTCTTACCTATACCTATAAAATCCGTAAGGGTGTTAAATGGTACACTTCAGATGG
TGAAGAGTATGCTGATGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCTGATTCCAAAGCTGGAGCCCTCT
ATTTGGTACAAGATTCTATTGCAGGCTTGTCTGACTACCTCTCTGGTGCCAATAAAGATTTCTCAAATGTAGGTGTCAAA
GCAATCGACGATCACACATTGCAATATACCCTTAAAAAACCAGAACCATACTGGAATTCTAAGACAACCTATGGTTTGCT
CTTCCCGGTTAACGAAGACTTTCTTAAGAATAAAGGAAAAGATTTTGGTAAGTCAACAGACCCAACCTCTATCCTTTATA
ACGGTCCTTTCCTTCTTAAATCTTTGACAGCTAAATCATCTATCGAGTTGACTAAGAATGAGAATTATTGGGATAAGAAG
AACGTGCATTTCGACGCTATCAAATTGTCATATTATGATGGTTCTGACCAGGAAGCTCAAGAGCGTAGCTTCTCAGATGG
TGCTCTCAGCATTGCACGTGTATTCCCTATGAGCTCTAACTATGCGTCAGTAGAAAAGAAATATAAAGATAATATTTATT
ACACAGCACCAGGTGCGTCTACAGCAGCTATTGGTGTGAATATTGATCGTCAAAGCTATAAATTCTCAGCTAAGAAGACA
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTCCGTCAATCAATCAACTTCGCTATTGATCGTAC
AGCTTATCAATCTCAAGTTAATGGTAAAGATGGGGCAGCTCTTGCTCTACGTAACCTCTTTGTTCCTTCTGATTTTGTCA
GTGCAGGGGATAAGACCTTTGGTGACCTTGTGACAGAGAAAATGAGCACTTACGGTGATGAATGGTCTGGTGTCAATTTT
GCGGATGGTCAAGATGGTCTCTACAATGCGGAAAAAGCTAAGACTGAGTTTGCCAAAGCCAAAGAATCTCTTCAAGGTGA
AGGTGTTCAATTCCCAATTCACTTAGACCTTCCAGTTGATCAAAGTTCTAAACTTAATGTTGCTCAAGCTCAATCATTGA
AACAAACGATTGAAAAATCATTGGGTAGTGAAAATGTAGTTATCGATATCAACCAGTTGTCATCTGATGACATGCAAAAT
GCAACCCTTAATGCGGCTAATGCGGCAGCAGAAGACTGGGATATTTCAAACGGTGTTGTTTGGGGTCCAGACTATCAAGA
TCCATCAACTTACCTTGATATCTTTAAGACAACTTCAAGTGAAAATACCAAGACTTTCATGAGTTATGATGATCCAAACA
ATGCGGCCGCAGCCCAAGTAGGTCTTAAAGATTATGACGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACCTCAAC
GCTCGTTACGACCGCTATGCCCAAGCTCAAGCATGGTTGGAAGATAGCTCGCTTGTCATTCCATTGACTGTTGGTAACGG
TGCAGCACCAGTTATCTCACGCTTGACACCATTTACGGGTGCTAGCATGCAAGTGGGTGATAAGAACTCATCAGACTACT
TCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

95.884

100

0.959
  amiA3 Streptococcus thermophilus LMG 18311

90.259

100

0.904
  amiA3 Streptococcus thermophilus LMD-9

90.107

100

0.902