Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   I6I02_RS02280 Genome accession   NZ_CP066093
Coordinates   460586..461512 (+) Length   308 a.a.
NCBI ID   WP_002886846.1    Uniprot ID   A0A0F3HAC7
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 455586..466512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS02270 (I6I02_02270) amiA3 457062..459032 (+) 1971 WP_198463711.1 peptide ABC transporter substrate-binding protein Regulator
  I6I02_RS02275 (I6I02_02275) amiC 459093..460586 (+) 1494 WP_002886845.1 ABC transporter permease Regulator
  I6I02_RS02280 (I6I02_02280) amiD 460586..461512 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  I6I02_RS02285 (I6I02_02285) amiE 461522..462607 (+) 1086 WP_198463712.1 ABC transporter ATP-binding protein Regulator
  I6I02_RS02290 (I6I02_02290) amiF 462600..463529 (+) 930 WP_049554144.1 ATP-binding cassette domain-containing protein Regulator
  I6I02_RS02295 (I6I02_02295) - 463580..464365 (-) 786 WP_198463713.1 ABC transporter permease -
  I6I02_RS02300 (I6I02_02300) - 464377..465075 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  I6I02_RS02305 (I6I02_02305) - 465080..465457 (-) 378 WP_022496273.1 GntR family transcriptional regulator -
  I6I02_RS02310 (I6I02_02310) - 465639..466433 (+) 795 WP_198463714.1 HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34607.77 Da        Isoelectric Point: 9.7054

>NTDB_id=517347 I6I02_RS02280 WP_002886846.1 460586..461512(+) (amiD) [Streptococcus salivarius strain FDAARGOS_1045]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTVVMLGILIAIVLMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVVIGLLVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTAKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=517347 I6I02_RS02280 WP_002886846.1 460586..461512(+) (amiD) [Streptococcus salivarius strain FDAARGOS_1045]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCAGCTTA
TTCTTACTGGAAATCAGTGATGCGTCAATTCTTTAAAAAGAAATCAACAGTAGTAATGTTGGGTATCTTGATTGCCATCG
TGTTGATGAGTTTCATCTATCCAATGTTCTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACAGACAGTAATGGTAAGTCCCTCTTTGATAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAATGTTGTCATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCTGCCCTCCTTGTAGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTCTGGAATATGATCTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCTTATAC
CATTCGTATTCAAATCATGCGTTACCGTGATTTGGAGTACAACTTGGCTTCTCGTACACTGGGAACGCCAACTGCTAAGA
TTGTGGTTAAAAATATCATGCCACAACTAGTATCAGTTATCGTAACTATGGCTAGTCAGCTCTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCATACTTTGGTTTAGGGCTTCCTGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTTGCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGCGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F3HAC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

98.377

100

0.984
  amiD Streptococcus thermophilus LMG 18311

97.403

100

0.974
  amiD Streptococcus thermophilus LMD-9

97.403

100

0.974