Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   I6I02_RS02290 Genome accession   NZ_CP066093
Coordinates   462600..463529 (+) Length   309 a.a.
NCBI ID   WP_049554144.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 457600..468529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS02275 (I6I02_02275) amiC 459093..460586 (+) 1494 WP_002886845.1 ABC transporter permease Regulator
  I6I02_RS02280 (I6I02_02280) amiD 460586..461512 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  I6I02_RS02285 (I6I02_02285) amiE 461522..462607 (+) 1086 WP_198463712.1 ABC transporter ATP-binding protein Regulator
  I6I02_RS02290 (I6I02_02290) amiF 462600..463529 (+) 930 WP_049554144.1 ATP-binding cassette domain-containing protein Regulator
  I6I02_RS02295 (I6I02_02295) - 463580..464365 (-) 786 WP_198463713.1 ABC transporter permease -
  I6I02_RS02300 (I6I02_02300) - 464377..465075 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  I6I02_RS02305 (I6I02_02305) - 465080..465457 (-) 378 WP_022496273.1 GntR family transcriptional regulator -
  I6I02_RS02310 (I6I02_02310) - 465639..466433 (+) 795 WP_198463714.1 HAD-IIB family hydrolase -
  I6I02_RS02315 (I6I02_02315) - 466426..467244 (+) 819 WP_037603016.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35005.06 Da        Isoelectric Point: 6.7325

>NTDB_id=517349 I6I02_RS02290 WP_049554144.1 462600..463529(+) (amiF) [Streptococcus salivarius strain FDAARGOS_1045]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKKIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERQKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=517349 I6I02_RS02290 WP_049554144.1 462600..463529(+) (amiF) [Streptococcus salivarius strain FDAARGOS_1045]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACCACTATCGGGCGTG
CCATTATTGGTCTAAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGACACTTGTCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTCGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCTAAAATCAAGAAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATTGGG
ATTGCACGTTCCTTGGTCATGCAACCTGATTTGGTTATCGCTGACGAACCCATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTCAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTTGAAGTACGTCCAGGACACTTTGTTT
GGGGTAACAAGGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.676

100

0.997
  amiF Streptococcus thermophilus LMG 18311

97.735

100

0.977
  amiF Streptococcus thermophilus LMD-9

97.411

100

0.974