Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KW2_RS11270 Genome accession   NC_022369
Coordinates   2340930..2341523 (-) Length   197 a.a.
NCBI ID   WP_021037998.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris KW2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2335930..2346523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW2_RS11235 (kw2_2263) - 2336098..2336370 (+) 273 WP_011677248.1 chorismate mutase -
  KW2_RS11240 (kw2_2264) - 2336404..2336853 (-) 450 WP_021037995.1 hypothetical protein -
  KW2_RS11245 (kw2_2265) - 2337071..2337271 (+) 201 WP_011836112.1 hypothetical protein -
  KW2_RS11250 (kw2_2266) glnA 2337332..2338672 (-) 1341 WP_021037996.1 type I glutamate--ammonia ligase -
  KW2_RS11255 (kw2_2267) - 2338734..2339099 (-) 366 WP_011836114.1 MerR family transcriptional regulator -
  KW2_RS11260 (kw2_2268) - 2339200..2339637 (-) 438 WP_021037997.1 low molecular weight protein-tyrosine-phosphatase -
  KW2_RS11265 (kw2_2269) ruvB 2339782..2340783 (-) 1002 WP_014573419.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  KW2_RS11270 (kw2_2270) ruvA 2340930..2341523 (-) 594 WP_021037998.1 Holliday junction branch migration protein RuvA Machinery gene
  KW2_RS11275 (kw2_2271) hexB 2341575..2343545 (-) 1971 WP_021037999.1 DNA mismatch repair endonuclease MutL Machinery gene
  KW2_RS11280 (kw2_2272) - 2343675..2344370 (-) 696 WP_021038000.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21163.73 Da        Isoelectric Point: 5.8174

>NTDB_id=51700 KW2_RS11270 WP_021037998.1 2340930..2341523(-) (ruvA) [Lactococcus cremoris subsp. cremoris KW2]
MFEYLNGKLVKISPTNIVIDLSGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLINAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGAVGISLLDAAPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQEAGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=51700 KW2_RS11270 WP_021037998.1 2340930..2341523(-) (ruvA) [Lactococcus cremoris subsp. cremoris KW2]
ATGTTTGAATATCTAAATGGAAAATTAGTTAAAATTTCCCCAACAAATATCGTGATTGACCTATCGGGAATAGGTTATCT
TATCAGCGTAGCCAATCCTTATGCTTGGTCTGCTTTAATGAATACAGAAGTAAAGATTTATGTTCATCAAGTTATTCGGG
AAGATGCACATAGCTTATATGGTTTTGTTAATGAGGCTGAAAAAGCTTTATTCTTGCGCCTAATTAGTGTTTCAGGAATC
GGGCCAAAGTCAGCTCTAGCTATTATTGCGGCAGCTGACAATGAAGGTTTAATCAATGCTATCGATAATAGCGATATTAA
GTATTTGACGAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAAATGGTGCTTGATTTAGCTGGGAAATTTGATGCGA
CAGGAGCTGTTGGGATTTCCCTTCTTGATGCTGCGCCTGCTGGTAATCTGGCTTTAGAAGAAGCCATTGAAGCTTTGCAA
GCTTTGGGCTATAAGGCGACAGAACTCAAGAAAATTGAGAAAAAATTGGCGCAAGAAGCCGGATTAACCAGTGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

59.406

100

0.609
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462

Multiple sequence alignment