Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   KZO18_RS09345 Genome accession   NZ_CP080085
Coordinates   1902708..1903223 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 19SZHZ869Rt     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1897708..1908223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO18_RS09320 (KZO18_09305) ygaZ 1898107..1898844 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  KZO18_RS09325 (KZO18_09310) ygaH 1898834..1899169 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  KZO18_RS09330 (KZO18_09315) emrR 1899260..1899790 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  KZO18_RS09335 (KZO18_09320) emrA 1899917..1901089 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  KZO18_RS09340 (KZO18_09325) emrB 1901106..1902644 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  KZO18_RS09345 (KZO18_09330) luxS 1902708..1903223 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  KZO18_RS09350 (KZO18_09335) gshA 1903373..1904929 (-) 1557 WP_000611812.1 glutamate--cysteine ligase -
  KZO18_RS09355 (KZO18_09340) yqaA 1905002..1905430 (-) 429 WP_001287454.1 YqaA family protein -
  KZO18_RS09360 (KZO18_09345) yqaB 1905427..1905993 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  KZO18_RS09390 (KZO18_09375) csrA 1907316..1907501 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=516933 KZO18_RS09345 WP_001130211.1 1902708..1903223(-) (luxS) [Escherichia coli strain 19SZHZ869Rt]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=516933 KZO18_RS09345 WP_001130211.1 1902708..1903223(-) (luxS) [Escherichia coli strain 19SZHZ869Rt]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731