Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   I6I32_RS04330 Genome accession   NZ_CP066041
Coordinates   898590..899543 (-) Length   317 a.a.
NCBI ID   WP_198464998.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 893590..904543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS04305 (I6I32_04305) - 894345..894968 (-) 624 WP_198464996.1 ribonuclease P -
  I6I32_RS04310 (I6I32_04310) jag 895024..896010 (-) 987 WP_198464997.1 RNA-binding cell elongation regulator Jag/EloR -
  I6I32_RS04315 (I6I32_04315) - 896025..896852 (-) 828 WP_000728099.1 membrane protein insertase YidC -
  I6I32_RS04320 (I6I32_04320) rnpA 896827..897198 (-) 372 WP_045591913.1 ribonuclease P protein component -
  I6I32_RS04325 (I6I32_04325) - 897348..898538 (-) 1191 WP_000167789.1 acetate kinase -
  I6I32_RS04330 (I6I32_04330) comYH 898590..899543 (-) 954 WP_198464998.1 class I SAM-dependent methyltransferase Machinery gene
  I6I32_RS04335 (I6I32_04335) - 899602..900192 (-) 591 WP_198464999.1 class I SAM-dependent methyltransferase -
  I6I32_RS04340 (I6I32_04340) comGG/cglG 900197..900625 (-) 429 WP_049478131.1 competence type IV pilus minor pilin ComGG Machinery gene
  I6I32_RS04345 (I6I32_04345) comGF/cglF 900603..901064 (-) 462 WP_198465000.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6I32_RS04350 (I6I32_04350) comGE/cglE 901027..901329 (-) 303 WP_000413375.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6I32_RS04355 (I6I32_04355) comGD/cglD 901292..901726 (-) 435 WP_198465001.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6I32_RS04360 (I6I32_04360) comGC/cglC 901689..902012 (-) 324 WP_000735798.1 competence type IV pilus major pilin ComGC Machinery gene
  I6I32_RS04365 (I6I32_04365) comGB/cglB 902014..903030 (-) 1017 WP_198465068.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6I32_RS04370 (I6I32_04370) comGA/cglA/cilD 902978..903919 (-) 942 WP_198465002.1 competence type IV pilus ATPase ComGA Machinery gene
  I6I32_RS04375 (I6I32_04375) - 903980..904345 (-) 366 WP_000286399.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35588.59 Da        Isoelectric Point: 4.1807

>NTDB_id=516647 I6I32_RS04330 WP_198464998.1 898590..899543(-) (comYH) [Streptococcus oralis strain FDAARGOS_1075]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEKVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVLVVEELFEQEEISILEIGSGMGILGATFLTSLSKKVDYLGIEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKDEVSLAAIIALPEDIFSTASQAKSIFVLQKKRDKEIEPFVYPLTSLQDPSVLFTFKENFQNWSKGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=516647 I6I32_RS04330 WP_198464998.1 898590..899543(-) (comYH) [Streptococcus oralis strain FDAARGOS_1075]
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTAGAGCAAAACAGTATCTACCTGGATGGTGAGACTGAGTTAGAGAAGGTCAAAGAGAACAATC
AAGCCCTTAAGCGCTTAGCGCTTCGCAAGGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCAGGACAAACG
GAGCCTTTACAGGCCAATCACCAGTTTACACCAGATGCCATTGCCCTCCTCTTGGTACTTGTTGTAGAAGAGTTGTTTGA
ACAAGAGGAAATTAGCATCCTCGAAATCGGTTCTGGTATGGGGATTTTGGGGGCTACTTTCTTGACTTCTCTCTCTAAAA
AAGTAGATTACTTGGGAATCGAAGTGGATGACTTGCTGATTGATTTGGCAGCCAGTATGGCAGATGTGATTGGTTTGCAG
GCTGGTTTTGTCCAAGGAGATGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTAGG
CTATTACCCAGACGATGCCATCGCTTCGCGCTATCAAGTGGCTTCTAGTCAAGAGCATACCTATGCCCACCATTTGCTGA
TGGAACAAGGCCTCAAGTACCTTAAGTCAGATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTATTGACCAGTCCTCAA
AGTGACTTATTAAAAGGGTGGCTCAAAGACGAAGTGAGTCTGGCTGCTATCATCGCTCTGCCAGAGGATATTTTCTCAAC
TGCAAGCCAAGCTAAAAGTATTTTTGTCTTACAGAAGAAAAGAGACAAGGAAATAGAACCCTTTGTCTACCCTCTTACTA
GCTTGCAAGATCCGTCAGTTTTGTTTACCTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

58.521

98.107

0.574
  comYH Streptococcus mutans UA159

58.199

98.107

0.571