Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   THIVI_RS16805 Genome accession   NC_018012
Coordinates   3790121..3791647 (-) Length   508 a.a.
NCBI ID   WP_014779737.1    Uniprot ID   I3YEB6
Organism   Thiocystis violascens DSM 198     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3785121..3796647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THIVI_RS16790 (Thivi_3463) - 3787062..3787355 (-) 294 WP_014779734.1 hypothetical protein -
  THIVI_RS22955 (Thivi_3464) - 3787369..3787908 (-) 540 WP_157174490.1 DUF2939 domain-containing protein -
  THIVI_RS16800 (Thivi_3465) - 3787925..3789844 (-) 1920 WP_014779736.1 ATP-binding cassette domain-containing protein -
  THIVI_RS16805 (Thivi_3466) comM 3790121..3791647 (-) 1527 WP_014779737.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  THIVI_RS16810 (Thivi_3467) - 3791664..3791930 (-) 267 WP_014779738.1 accessory factor UbiK family protein -
  THIVI_RS16815 (Thivi_3468) - 3792313..3793041 (+) 729 WP_014779739.1 TorF family putative porin -
  THIVI_RS16820 (Thivi_3469) glnK 3793118..3793456 (+) 339 WP_014779740.1 P-II family nitrogen regulator -
  THIVI_RS16825 (Thivi_3470) - 3793480..3794820 (+) 1341 WP_014779741.1 ammonium transporter -
  THIVI_RS16830 (Thivi_3471) speE 3795021..3795893 (-) 873 WP_014779742.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54487.29 Da        Isoelectric Point: 8.1978

>NTDB_id=51659 THIVI_RS16805 WP_014779737.1 3790121..3791647(-) (comM) [Thiocystis violascens DSM 198]
MALCILYSRARVGIHAPAVTVEVHLSGGLPSLSMVGLPELAVKESKDRVRGALLNGRFRFPDGHVTINLAPADLPKEGGR
FDLPIALGILGASGQVAAKALDRYEFIGELALSGALRPVNGVLPAAVAARDAGRELILPRENAAEAALVSGLSLRPAGHL
MEVCEHLNGTSLLSAFVSGEDSGHDNDPAYPELAEVRGQEHAKRALEIAAAGGHSLLLIGPPGTGKSMLANRLPGLLPPM
TEAEALETAAIRSVSDRDRFDPSRWRERPFRSPHHTASGVALVGGGSNPRPGEISLAHQGVLFLDELPEYDRKVLEVLRE
PLESGYIDISRAARQARFPARFQLLAAMNPCPCGYLGDSSGRCRCTIEQIGRYRGRISGPLLDRIDMHVEVPRLDVSRLG
GPRPADAETTALVRARVAAARVLQQTRAGKPNNALAPSEIDRDCALDEAGRRLMEQALTRLALSARAYHRILKVARTIAD
LQQANAIDSTHLSEAIGYRRLDRGQPHS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=51659 THIVI_RS16805 WP_014779737.1 3790121..3791647(-) (comM) [Thiocystis violascens DSM 198]
TTGGCGCTCTGCATCCTGTACAGCCGCGCCCGCGTCGGCATCCATGCCCCGGCGGTGACGGTCGAGGTCCATCTGTCCGG
CGGTCTGCCCTCGCTCTCGATGGTCGGTCTGCCGGAACTGGCGGTGAAAGAGAGCAAGGATCGGGTGCGCGGCGCCCTGC
TCAACGGGCGTTTCCGCTTTCCCGACGGGCACGTCACCATCAATCTGGCGCCCGCGGATTTGCCCAAGGAAGGCGGTCGC
TTCGATCTGCCGATCGCGCTCGGCATCCTGGGCGCCTCGGGTCAGGTGGCCGCCAAGGCGCTCGATCGCTATGAGTTCAT
CGGCGAACTGGCCCTGTCCGGCGCGCTGCGGCCGGTCAATGGGGTGCTGCCAGCGGCGGTCGCGGCGCGCGACGCGGGCC
GCGAACTCATCCTGCCGCGCGAGAATGCCGCCGAGGCGGCGCTGGTCAGCGGTCTGTCGCTGCGACCGGCGGGTCATCTG
ATGGAGGTCTGCGAACATCTGAATGGCACCAGCCTGCTGTCCGCCTTCGTGTCGGGCGAGGATTCCGGCCATGACAACGA
TCCCGCCTATCCCGAACTGGCCGAGGTGCGCGGCCAGGAGCACGCCAAGCGAGCATTGGAGATTGCCGCCGCGGGGGGGC
ATAGCCTGCTGTTGATCGGCCCGCCCGGCACGGGCAAGTCGATGCTGGCCAACCGGCTGCCGGGTCTGCTGCCGCCCATG
ACCGAGGCCGAGGCGCTGGAGACGGCGGCGATCCGCTCGGTTAGCGACCGGGATCGCTTCGACCCGAGCCGCTGGCGCGA
ACGGCCCTTTCGGTCGCCGCACCATACCGCGTCCGGGGTCGCGCTGGTCGGCGGGGGCAGCAATCCCCGGCCGGGCGAGA
TTTCGCTGGCCCATCAGGGCGTGCTCTTTCTCGACGAACTGCCGGAATACGATCGCAAGGTGCTGGAGGTGCTGCGCGAG
CCCCTGGAGTCGGGTTATATCGATATCTCCAGGGCGGCGCGCCAGGCGCGCTTTCCGGCGCGCTTCCAGTTGCTGGCGGC
CATGAATCCCTGCCCCTGCGGCTATCTGGGCGACAGCAGCGGGCGCTGCCGCTGTACCATCGAGCAGATCGGGCGCTATC
GCGGACGTATCTCCGGCCCCCTGCTCGACCGTATCGACATGCACGTCGAGGTGCCCCGGCTCGATGTCTCGCGGCTGGGC
GGACCGCGTCCCGCGGACGCCGAAACCACGGCGCTGGTACGCGCGCGGGTCGCCGCCGCCCGCGTCCTCCAGCAGACCCG
CGCCGGCAAGCCGAACAACGCGCTGGCACCGAGCGAGATCGATCGCGACTGCGCGCTCGACGAGGCCGGGCGGCGACTCA
TGGAGCAAGCGCTGACCCGCCTTGCACTCTCGGCGCGGGCCTACCATCGGATCCTGAAGGTCGCCCGGACCATCGCCGAT
CTTCAGCAGGCGAACGCCATCGATTCCACGCACCTGAGCGAAGCTATCGGCTATCGTCGTCTCGATCGAGGACAGCCGCA
CTCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I3YEB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.04

99.409

0.557
  comM Vibrio campbellii strain DS40M4

55.315

100

0.553
  comM Haemophilus influenzae Rd KW20

54.241

99.803

0.541
  comM Glaesserella parasuis strain SC1401

54.365

99.213

0.539
  comM Legionella pneumophila str. Paris

49.902

100

0.502
  comM Legionella pneumophila strain ERS1305867

49.902

100

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.622

100

0.486

Multiple sequence alignment