NTDB

Overview

Name	comYH	Type	Machinery gene
Locus tag	I6H77_RS03345	Genome accession	NZ_CP066021
Coordinates	693716..694669 (-)	Length	317 a.a.
NCBI ID	WP_000345144.1	Uniprot ID	-
Organism	Streptococcus oralis strain FDAARGOS_1020
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 688716..699669

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6H77_RS03320 (I6H77_03320)	-	689471..690094 (-)	624	WP_000921432.1	hypothetical protein	-
I6H77_RS03325 (I6H77_03325)	jag	690150..691136 (-)	987	WP_000242591.1	RNA-binding cell elongation regulator Jag/EloR	-
I6H77_RS03330 (I6H77_03330)	-	691151..691978 (-)	828	WP_000728097.1	membrane protein insertase YidC	-
I6H77_RS03335 (I6H77_03335)	rnpA	691953..692324 (-)	372	WP_000748120.1	ribonuclease P protein component	-
I6H77_RS03340 (I6H77_03340)	-	692474..693664 (-)	1191	WP_000167789.1	acetate kinase	-
I6H77_RS03345 (I6H77_03345)	comYH	693716..694669 (-)	954	WP_000345144.1	class I SAM-dependent methyltransferase	Machinery gene
I6H77_RS03350 (I6H77_03350)	-	694730..695317 (-)	588	WP_000679790.1	class I SAM-dependent methyltransferase	-
I6H77_RS03355 (I6H77_03355)	comGG/cglG	695350..695763 (-)	414	WP_000265647.1	competence type IV pilus minor pilin ComGG	Machinery gene
I6H77_RS03360 (I6H77_03360)	comGF/cglF	695741..696202 (-)	462	WP_002875275.1	competence type IV pilus minor pilin ComGF	Machinery gene
I6H77_RS03365 (I6H77_03365)	comGE/cglE	696165..696467 (-)	303	WP_000413369.1	competence type IV pilus minor pilin ComGE	Machinery gene
I6H77_RS03370 (I6H77_03370)	comGD/cglD	696430..696864 (-)	435	WP_001180060.1	competence type IV pilus minor pilin ComGD	Machinery gene
I6H77_RS03375 (I6H77_03375)	comGC/cglC	696827..697150 (-)	324	WP_000735794.1	competence type IV pilus major pilin ComGC	Machinery gene
I6H77_RS03380 (I6H77_03380)	comGB/cglB	697152..698168 (-)	1017	WP_002875106.1	competence type IV pilus assembly protein ComGB	Machinery gene
I6H77_RS03385 (I6H77_03385)	comGA/cglA/cilD	698116..699057 (-)	942	WP_000249583.1	competence type IV pilus ATPase ComGA	Machinery gene
I6H77_RS03390 (I6H77_03390)	-	699119..699484 (-)	366	WP_000286399.1	DUF1033 family protein	-

Sequence

Protein

Download Length: 317 a.a. Molecular weight: 35472.48 Da Isoelectric Point: 4.2227

                                >NTDB_id=516455 I6H77_RS03345 WP_000345144.1 693716..694669(-) (comYH) [Streptococcus oralis strain FDAARGOS_1020]

MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETNLEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT

EPLQANHQFTPDVISLLLVLVVEELLHKEEISILEIGSGMGILGATFLTSLAKKVDYLGVEVDDLLIDLAASMADVIGLQ

AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ

SDLLKGWLKDEVSLAAIIALPEDIFSTASQAKSIFVLQKKGDKELEPFVYPLTSLQDQSVLLNFKENFQNWSKGTEI

Nucleotide

Download Length: 954 bp

                                >NTDB_id=516455 I6H77_RS03345 WP_000345144.1 693716..694669(-) (comYH) [Streptococcus oralis strain FDAARGOS_1020]

ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA

CTTTTATGACGCCTTGGTAGAGCAAAATAGTATCTATCTAGATGGCGAGACCAATCTAGAGCAGGTCAAGGAGAACAATC

AAGCCCTTAAACGCCTAGCGCTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCAGGACAAACG

GAACCTTTACAGGCCAATCACCAGTTTACACCGGATGTCATTTCCCTCCTCTTGGTACTTGTTGTAGAAGAGTTGCTTCA

TAAAGAGGAAATTAGCATCCTCGAAATAGGCTCTGGTATGGGCATTTTGGGGGCTACTTTCTTGACTTCTCTTGCTAAAA

AAGTAGATTACTTGGGAGTCGAAGTGGATGATTTGCTAATTGATCTGGCGGCTAGTATGGCAGATGTGATCGGTTTGCAG

GCAGGATTTGTCCAAGGAGATGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTAGG

CTATTACCCAGACGATGCCATCGCTTCTCGCTATCAAGTGGCTTCTAGTCAAGAGCATACCTATGCCCACCATTTGCTGA

TGGAGCAAGGTCTCAAGTACCTTAAGTCAGATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTATTGACCAGTCCTCAA

AGTGACTTATTAAAAGGGTGGCTCAAAGACGAAGTGAGTCTGGCTGCTATCATCGCTCTGCCAGAGGATATTTTCTCAAC

TGCAAGCCAAGCTAAAAGTATTTTTGTCTTACAGAAGAAAGGAGATAAAGAACTAGAACCCTTTGTCTATCCTCTTACTA

GCTTGCAAGATCAGTCAGTTTTGTTGAACTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-295)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comYH	Streptococcus mutans UA140	58.199	98.107	0.571
comYH	Streptococcus mutans UA159	57.878	98.107	0.568

Detailed information NTG0516455