Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   I6H77_RS00465 Genome accession   NZ_CP066021
Coordinates   99555..100511 (-) Length   318 a.a.
NCBI ID   WP_000495880.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 94555..105511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS00445 (I6H77_00445) ftsW 94599..95822 (-) 1224 WP_000703344.1 cell division peptidoglycan polymerase FtsW -
  I6H77_RS00450 (I6H77_00450) prsA 96010..96951 (-) 942 WP_000728082.1 peptidylprolyl isomerase PrsA -
  I6H77_RS00455 (I6H77_00455) - 97019..97732 (-) 714 WP_000230403.1 O-methyltransferase -
  I6H77_RS00460 (I6H77_00460) pepF 97734..99536 (-) 1803 WP_000244099.1 oligoendopeptidase F Regulator
  I6H77_RS00465 (I6H77_00465) coiA 99555..100511 (-) 957 WP_000495880.1 competence protein CoiA Machinery gene
  I6H77_RS00470 (I6H77_00470) - 100588..101736 (-) 1149 WP_000200351.1 hypothetical protein -
  I6H77_RS00475 (I6H77_00475) tehB 101914..102774 (-) 861 WP_000413065.1 SAM-dependent methyltransferase TehB -
  I6H77_RS00480 (I6H77_00480) smpB 102789..103256 (-) 468 WP_001051742.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 37803.29 Da        Isoelectric Point: 9.3646

>NTDB_id=516429 I6H77_RS00465 WP_000495880.1 99555..100511(-) (coiA) [Streptococcus oralis strain FDAARGOS_1020]
MFVARDAKGNLVNALEKDVTKQAYTCPACGGGLRLRQGQSIRTHFAHERLRDCMAIFENESPEHLGNKEALYHWAKKDSQ
VALEYSLPEIQQVADVLVNEKLALEVQCSPLSQKLLGDRSQGYRSQGYQVIWLLGEKLWLKERLTQLQRGFLYFSQNMGF
YVWELDLKKQVLRLKYLLHQDLRGKLHFQVKEFPYGKGNLLEILRFPYQKQKLPRFAVVQDPTICHYIRQQLYYQTSYWM
KKQEEAYYQGDNLLNHQLDDWYPQVRPIESGDFLQIETDLTSYYRNFQAYYQKNPKNNRQKLYPPAFYHLYFSKNVVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=516429 I6H77_RS00465 WP_000495880.1 99555..100511(-) (coiA) [Streptococcus oralis strain FDAARGOS_1020]
ATGTTTGTAGCCAGAGATGCCAAGGGGAATTTGGTGAATGCCCTTGAAAAAGATGTGACCAAGCAAGCCTATACTTGTCC
AGCCTGTGGGGGCGGACTACGATTACGTCAAGGACAGAGTATTCGAACGCACTTTGCCCATGAAAGGTTAAGAGATTGTA
TGGCCATTTTTGAAAATGAAAGTCCAGAACACTTGGGCAACAAAGAGGCCCTTTATCACTGGGCCAAGAAGGACAGTCAG
GTCGCCTTAGAATATAGTCTGCCTGAGATTCAGCAGGTTGCGGATGTTCTTGTCAATGAGAAACTAGCTCTGGAGGTTCA
GTGCAGCCCCTTGTCTCAAAAGCTTTTAGGTGATAGAAGCCAAGGATACCGTAGCCAAGGCTATCAGGTTATCTGGCTAC
TGGGAGAAAAACTCTGGTTAAAAGAGCGATTAACACAATTGCAAAGGGGATTTCTCTATTTTAGTCAAAATATGGGTTTC
TATGTTTGGGAACTGGATCTCAAAAAACAAGTTTTGAGACTCAAATATCTTTTGCATCAGGACCTACGTGGCAAGCTTCA
TTTTCAGGTCAAAGAATTTCCCTATGGAAAAGGAAATCTCTTGGAAATCCTACGATTTCCTTATCAAAAACAAAAACTGC
CTCGTTTTGCAGTTGTGCAAGATCCCACTATCTGTCACTACATTCGCCAGCAGTTGTACTACCAAACGTCCTACTGGATG
AAGAAGCAGGAGGAAGCTTATTATCAAGGAGACAATCTATTAAACCATCAACTGGACGACTGGTATCCCCAGGTCAGACC
GATAGAGTCAGGTGATTTTTTGCAGATTGAAACGGATTTGACTAGCTATTATAGAAATTTTCAGGCTTACTATCAAAAAA
ATCCGAAAAATAATCGCCAAAAGCTCTATCCACCAGCCTTTTATCACTTATATTTCTCAAAAAATGTGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(12-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae Rx1

70.755

100

0.708
  coiA Streptococcus pneumoniae D39

70.755

100

0.708
  coiA Streptococcus pneumoniae R6

70.755

100

0.708
  coiA Streptococcus mitis NCTC 12261

70.755

100

0.708
  coiA Streptococcus pneumoniae TIGR4

70.44

100

0.704
  coiA Lactococcus lactis subsp. cremoris KW2

41.538

100

0.425