Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I6H77_RS00460 Genome accession   NZ_CP066021
Coordinates   97734..99536 (-) Length   600 a.a.
NCBI ID   WP_000244099.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 92734..104536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS00445 (I6H77_00445) ftsW 94599..95822 (-) 1224 WP_000703344.1 cell division peptidoglycan polymerase FtsW -
  I6H77_RS00450 (I6H77_00450) prsA 96010..96951 (-) 942 WP_000728082.1 peptidylprolyl isomerase PrsA -
  I6H77_RS00455 (I6H77_00455) - 97019..97732 (-) 714 WP_000230403.1 O-methyltransferase -
  I6H77_RS00460 (I6H77_00460) pepF 97734..99536 (-) 1803 WP_000244099.1 oligoendopeptidase F Regulator
  I6H77_RS00465 (I6H77_00465) coiA 99555..100511 (-) 957 WP_000495880.1 competence protein CoiA Machinery gene
  I6H77_RS00470 (I6H77_00470) - 100588..101736 (-) 1149 WP_000200351.1 hypothetical protein -
  I6H77_RS00475 (I6H77_00475) tehB 101914..102774 (-) 861 WP_000413065.1 SAM-dependent methyltransferase TehB -
  I6H77_RS00480 (I6H77_00480) smpB 102789..103256 (-) 468 WP_001051742.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69823.73 Da        Isoelectric Point: 4.5986

>NTDB_id=516428 I6H77_RS00460 WP_000244099.1 97734..99536(-) (pepF) [Streptococcus oralis strain FDAARGOS_1020]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDLTEKVQTASQYEGHLLDSADSLLEITEFSLDLERQVEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLEQAFSFYEPEFMEISEEQYAAFLEAQPKLQVYKHFFDKLLQKKDHVLSQREEELLAGA
GEIFGSASETFAILDNADISFPYVLDDEGNEVQLSHGTYIRLMESKNREVRRGAYEALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVDYSFTYEEALK
KAEEALAVLGDDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLRKEDNPQIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSPEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=516428 I6H77_RS00460 WP_000244099.1 97734..99536(-) (pepF) [Streptococcus oralis strain FDAARGOS_1020]
ATGGTATTACAACGACATGAAATAAATGAAAAAGATACATGGGATCTTTCAACAATCTACCCAACAGACCAGGCTTGGGA
AGAAGCCTTGAAAGATTTAACTGAAAAAGTACAAACAGCATCTCAGTATGAGGGGCATCTCCTGGATAGCGCAGACAGTT
TGCTTGAGATTACAGAATTCTCACTTGACTTGGAACGCCAAGTTGAAAAGCTTTATGTCTATGCGCATATGAAAAATGAC
CAGGACACACGTGAAGCCAAGTATCAAGAGTACTATGCTAAGGCAATGACCCTATACAGTCAGTTAGAACAAGCCTTTTC
ATTCTATGAACCTGAGTTTATGGAGATTAGCGAAGAACAGTATGCGGCCTTCCTAGAAGCTCAACCAAAACTCCAAGTTT
ACAAGCACTTTTTTGACAAGCTCTTGCAAAAGAAAGACCATGTTCTTTCGCAACGTGAGGAAGAATTGCTTGCTGGAGCA
GGAGAAATCTTTGGTTCTGCTAGTGAAACCTTCGCTATTTTGGACAATGCGGATATTAGCTTCCCATACGTGCTTGATGA
CGAAGGCAATGAAGTGCAACTCTCACACGGTACTTACATCCGTTTGATGGAGTCTAAAAACCGTGAAGTGCGTCGTGGTG
CCTATGAAGCCCTTTATGCGACATACGAGCAATTTCAACACACTTATGCTAAGACTTTGCAGACAAATGTTAAGGTGCAA
AACTACCGAGCAAAAGTTCGCAACTATAAGAGTGCTCGCCATGCAGCCCTTGCAGCAAACTTTGTTCCAGAAAGTGTCTA
TGATAATCTAGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTGCATCGTTACCTAGAACTTCGTTCTAAAATCTTGGGGA
TTTCCGACCTCAAGATGTACGATGTCTACACACCGCTTTCGTCAGTAGATTATAGCTTTACCTACGAAGAAGCCTTGAAA
AAGGCAGAAGAGGCCTTGGCGGTTTTAGGTGACGACTACTTGAGCCGTGTCAAACGTGCCTTCAGTGAGCGTTGGATTGA
TGTCTATGAAAACCAAGGCAAGCGTTCTGGTGCCTACTCTGGTGGTTCTTATGATACCAATGCCTTTATGCTTCTCAACT
GGCAGGACAATCTAGACAATCTTTTTACCCTTGTCCATGAGACAGGTCACAGTATGCACTCCAGCTATACTCGTGAAACC
CAACCTTATGTTTACGGAGATTATTCTATCTTCTTGGCTGAGATTGCCTCAACGACTAACGAAAATATCTTGACAGAGAA
ATTGTTGGAAGAAGTAGAAGACGATGCGACTCGTTTTGCAATTCTCAATAACTTCCTAGACGGTTTCCGTGGAACAGTCT
TCCGTCAAACTCAATTCGCTGAGTTTGAACATGCTATCCACCAAGCAGACCAAAATGGAGAAGTCTTGACAAGTGATTTC
CTCAATAAGCTCTACGCTGACTTGAACCAAGAGTACTATGGACTCAGAAAGGAAGACAATCCTCAGATCCAATACGAGTG
GGCGCGCATTCCACACTTCTACTATAACTACTATGTTTATCAGTATTCAACAGGTTTTGCAGCTGCTTCAGCCTTGGCTG
AAAAGATTGTCCATGGTAGTCCAGAAGATCGTGACCGCTATATCGACTATCTCAAAGCAGGTAAGTCAGACTATCCACTC
AATGTTATGAGAAAAGCGGGAGTGGATATGGAAAAAGAAGACTATCTCAACGACGCCTTTGCAGTCTTTGAACGTCGCTT
GAACGAGTTTGAAGCCCTTGTTGAAAAATTGGGACTAGCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.45

99.333

0.67