Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I6H57_RS07980 Genome accession   NZ_CP065991
Coordinates   1705291..1706820 (+) Length   509 a.a.
NCBI ID   WP_005694706.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain FDAARGOS_1000     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1700291..1711820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H57_RS07955 (I6H57_07955) oppC 1700614..1701549 (+) 936 WP_005694700.1 oligopeptide ABC transporter permease OppC -
  I6H57_RS07960 (I6H57_07960) - 1701559..1702530 (+) 972 WP_005694702.1 ABC transporter ATP-binding protein -
  I6H57_RS07965 (I6H57_07965) oppF 1702527..1703525 (+) 999 WP_005694703.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  I6H57_RS07970 (I6H57_07970) - 1703565..1704434 (-) 870 WP_005694704.1 DUF535 family protein -
  I6H57_RS07975 (I6H57_07975) yihA 1704547..1705161 (+) 615 WP_032822378.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  I6H57_RS07980 (I6H57_07980) comM 1705291..1706820 (+) 1530 WP_005694706.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6H57_RS07985 (I6H57_07985) nfuA 1706864..1707448 (-) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  I6H57_RS07990 (I6H57_07990) - 1707564..1708253 (-) 690 WP_032822376.1 ComF family protein -
  I6H57_RS07995 (I6H57_07995) comE 1708273..1709655 (-) 1383 WP_005694710.1 type IV pilus secretin PilQ Machinery gene
  I6H57_RS08000 (I6H57_08000) - 1709657..1710040 (-) 384 WP_005694711.1 hypothetical protein -
  I6H57_RS08005 (I6H57_08005) - 1710040..1710582 (-) 543 WP_005694712.1 hypothetical protein -
  I6H57_RS08010 (I6H57_08010) - 1710579..1711094 (-) 516 WP_005694713.1 hypothetical protein -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55804.20 Da        Isoelectric Point: 9.8426

>NTDB_id=516034 I6H57_RS07980 WP_005694706.1 1705291..1706820(+) (comM) [Haemophilus parainfluenzae strain FDAARGOS_1000]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDGSRLKQFEFVGELALTGELRGVHGVIPAILAAQKAKRAPIIAYQNANEASLVSEQETYFAKNL
LEVVQFLNNQDKLPLASLLVQESAVRFSAKNHLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDSEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVIRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSQQVREKVLKVREIQLARAGKINAYLSSKEIERDCKLQDKDSLFLENALNKLGLSVRAYHRILKVSRTIADLN
GEKEIQQPHLAEALGYRAMDRLLQKLSAA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=516034 I6H57_RS07980 WP_005694706.1 1705291..1706820(+) (comM) [Haemophilus parainfluenzae strain FDAARGOS_1000]
ATGTCTCTTGCCATTGTTTATAGCCGTGCCTCAATGGGCGTACAAGCCCCTCTTGTTACCATTGAGGTACACTTAAGTAA
CGGAAAACCTGGATTTACCTTAGTTGGCCTACCCGAAAAAACTGTAAAAGAAGCGCAAGATCGTGTCAGAAGTGCATTAA
TGAATGCGCAGTTCAAATATCCTGCCAAACGCATCACCGTAAATCTTGCACCGGCTGATTTACCCAAAGAAGGGGGACGA
TTTGATTTACCCATTGCGATAGGTATCTTGGCTGCATCAGATCAATTAGATGGTAGCCGTTTAAAACAATTTGAATTCGT
TGGTGAACTCGCATTAACGGGTGAATTACGTGGCGTACACGGTGTCATTCCTGCCATTTTAGCAGCTCAAAAAGCGAAAC
GCGCACCCATTATCGCTTATCAAAATGCCAATGAGGCGTCGCTTGTCTCAGAGCAAGAGACTTATTTCGCTAAAAACCTT
TTAGAGGTCGTGCAATTCTTAAATAATCAAGATAAATTACCTTTGGCCTCATTACTTGTACAAGAAAGTGCAGTCAGATT
TTCAGCTAAAAATCACTTAGATTTGACGGATATTATTGGTCAGCAACATGCGAAACGAGCACTAACAATAGCTGCCGCAG
GTCAGCACAACCTACTCTTTTTAGGTCCTCCCGGTACAGGTAAAACTATGTTAGCAAGTCGTCTCACCGCATTACTCCCT
GAAATGACTGATTCAGAAGCCATTGAAACCGCTTCGGTTACGAGTTTAGTACAAAATGAATTAAATTTTCATAACTGGAA
ACAACGACCGTTTCGAGCACCACATCATAGTGCCTCTTTGCCAGCCTTAGTAGGTGGAGGAACCATTCCAAAACCAGGCG
AAATATCGCTCGCACATAATGGCGTACTTTTTCTTGATGAATTGCCTGAGTTTGAGCGTAAAGTACTGGATGCACTCCGC
CAGCCATTAGAAAGTGGAGAAATTATTATTTCGCGAGCCAATGCTAAAATCCAATTTCCTGCTCGCTTTCAATTAGTTGC
GGCGATGAATCCAAGTCCAACGGGGCATTATACTGGAACACATAACCGCACCTCGCCACAACAAGTGATACGTTATTTAA
ATCGCCTTTCTGGCCCATTTTTAGATCGTTTTGATTTATCCATTGAAGTGCCCCTTCTGCCACAAGGTAGCTTACAGAAT
ACTGGAGATAGAGGCGAAACAAGCCAACAAGTAAGAGAAAAAGTGTTAAAAGTGAGAGAAATTCAACTTGCTCGAGCAGG
CAAGATCAATGCATATCTTTCAAGCAAAGAAATTGAACGAGACTGTAAATTACAAGATAAAGATTCACTATTTCTTGAGA
ATGCACTGAATAAGCTAGGGCTTTCAGTAAGAGCCTACCATCGAATTTTGAAAGTCTCACGCACAATTGCCGATTTGAAT
GGCGAAAAAGAGATACAACAACCTCATTTAGCAGAAGCGCTAGGATATCGGGCAATGGATCGGTTGTTACAGAAATTATC
TGCCGCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

91.913

99.607

0.916
  comM Glaesserella parasuis strain SC1401

79.684

99.607

0.794
  comM Vibrio cholerae strain A1552

66.929

99.804

0.668
  comM Vibrio campbellii strain DS40M4

65.815

100

0.658
  comM Legionella pneumophila str. Paris

52.183

99.018

0.517
  comM Legionella pneumophila strain ERS1305867

52.183

99.018

0.517
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.266

100

0.475