Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   I6H57_RS05400 Genome accession   NZ_CP065991
Coordinates   1176979..1179381 (-) Length   800 a.a.
NCBI ID   WP_005696427.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain FDAARGOS_1000     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1171979..1184381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H57_RS05380 (I6H57_05380) kdsB 1173182..1173940 (-) 759 WP_005697219.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  I6H57_RS05385 (I6H57_05385) - 1173950..1174129 (-) 180 WP_005696424.1 Trm112 family protein -
  I6H57_RS05390 (I6H57_05390) lpxK 1174146..1175126 (-) 981 WP_032822464.1 tetraacyldisaccharide 4'-kinase -
  I6H57_RS05395 (I6H57_05395) msbA 1175180..1176928 (-) 1749 WP_005696426.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  I6H57_RS05400 (I6H57_05400) rec2 1176979..1179381 (-) 2403 WP_005696427.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I6H57_RS05405 (I6H57_05405) dksA 1179642..1180079 (+) 438 WP_005696429.1 RNA polymerase-binding protein DksA -
  I6H57_RS05410 (I6H57_05410) pcnB 1180176..1181672 (+) 1497 WP_370447717.1 polynucleotide adenylyltransferase PcnB -
  I6H57_RS05415 (I6H57_05415) folK 1181672..1182175 (+) 504 WP_005696431.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  I6H57_RS05420 (I6H57_05420) dcuC 1182230..1183588 (-) 1359 WP_005696432.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 89985.30 Da        Isoelectric Point: 9.5040

>NTDB_id=516030 I6H57_RS05400 WP_005696427.1 1176979..1179381(-) (rec2) [Haemophilus parainfluenzae strain FDAARGOS_1000]
MKITLFQLCMMFIVSALSLLVVPDFLLFTWQRAGLGILLLVMTTLCSHWFNYFKARNFCMSGILFLLTLAYAHSPALSLL
GQAEKISSLPNKITLDLYISEILHQQDYQTLVARTSLFDGKEQQIFINWKAPEKPQVGEIWRADVKLRPISARLNHGGFD
RQQWYFSKRIIAVGNVKSAVKMSEDFSYRTHFLQTSLNQTEGLSLQGLLIALAFGERAWLDNKTWLIYQQTNTAHLIAIS
GLHIGLAMGIGFFFARFLQLALPTRFISPWFPLCFGVLIALGYAYLAGFSLPTFRAMMALLFIAILQFSRRYYTPSKMLC
LVVAFLLFCDPLMPLSVSFWLSVGAVTCLIVWYRYVPLSIIEWQHQKLSRKVRWILGLFHLQLGLLILFTPIQLFFFNGF
ALNGFLANLIAVPLYSFLLVPLILFAVLTNGAFSSWHLSNTIAQGITQFLSIFQGSYVPISINLSLILTALLSLVFGGML
YGLYFASQRKTKNTPLKSSRFFTLNSTKILSSEAYKQALLGVILISSFCIGTLGYRYITKPKWQLDTLDVGQGLATLIVK
EGKGVLYDTGPAWQSGIGGSSMAELEILPYLQREGIELETLILSHDDNDHSGGAKTILTAYSEIELITPSRKSYGEMHRT
FCLQGKQWQWRGLDFKILSPTQITDRAENPQSCVILLTDGQYQILLTGDADVATERSFAENLGKINVLQVGHHGSKTSTG
EFLLGQTKPDIALISSGRWNAWNFPHPTVIERLNRYQSAVENTAISGHIRLNFTEKGIEIEKARGDFSPWFARVIGLSPK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=516030 I6H57_RS05400 WP_005696427.1 1176979..1179381(-) (rec2) [Haemophilus parainfluenzae strain FDAARGOS_1000]
ATGAAAATCACGCTATTTCAACTGTGCATGATGTTTATTGTTTCTGCCTTATCCTTGCTTGTAGTACCTGATTTTTTACT
GTTTACCTGGCAACGAGCAGGGCTGGGCATTTTATTGCTGGTTATGACCACACTTTGTTCCCATTGGTTCAATTATTTTA
AAGCTAGAAATTTTTGCATGAGCGGTATCTTGTTTTTGCTTACTTTGGCTTATGCGCATTCACCTGCTTTATCGTTATTG
GGACAAGCAGAGAAAATTTCAAGTTTACCAAATAAAATCACCTTAGATCTTTATATCTCAGAAATTCTTCATCAACAAGA
TTATCAAACGTTGGTTGCAAGAACGTCATTATTTGATGGGAAAGAACAACAGATTTTTATTAATTGGAAAGCGCCGGAAA
AGCCACAAGTAGGTGAAATTTGGCGGGCTGATGTAAAACTTCGACCTATTTCTGCAAGACTTAATCATGGGGGATTTGAT
CGACAGCAATGGTATTTTTCCAAAAGGATTATTGCCGTTGGAAATGTGAAAAGTGCGGTCAAAATGAGCGAAGATTTTTC
TTACCGCACACATTTTCTACAGACTAGCCTCAATCAGACAGAGGGGCTTTCTTTGCAAGGCTTGCTTATTGCATTGGCAT
TTGGTGAGCGGGCTTGGTTAGATAATAAAACATGGCTGATTTACCAACAAACGAATACGGCACATTTGATTGCCATTTCA
GGGCTCCATATTGGTTTAGCAATGGGAATAGGCTTTTTCTTTGCTCGATTCTTGCAACTCGCACTGCCTACACGCTTTAT
TTCACCCTGGTTTCCACTTTGCTTTGGTGTGTTGATTGCTTTAGGTTATGCCTATTTAGCCGGATTTAGTTTACCGACCT
TCCGTGCAATGATGGCATTGCTTTTTATTGCAATCCTTCAATTTTCGCGACGATATTACACGCCTTCGAAAATGCTTTGT
TTGGTCGTGGCATTTCTGCTTTTTTGTGATCCACTTATGCCACTTTCGGTTAGCTTTTGGCTTTCAGTTGGTGCTGTTAC
CTGCCTGATTGTATGGTACCGATATGTTCCCTTATCAATAATCGAGTGGCAACATCAAAAATTATCCCGCAAAGTGCGGT
GGATTTTGGGCTTGTTTCATTTGCAACTTGGGCTGCTGATTTTATTCACGCCTATTCAACTTTTCTTTTTTAATGGCTTT
GCGTTAAATGGATTCTTGGCGAATTTAATCGCAGTGCCCTTGTATAGTTTCTTACTGGTACCCTTGATTCTCTTTGCAGT
GTTAACGAATGGCGCATTTTCTTCTTGGCATCTTTCAAATACGATTGCTCAAGGTATTACGCAATTTCTCAGTATTTTCC
AAGGCTCGTATGTTCCGATTTCGATTAATTTATCCCTCATTCTGACCGCACTTTTAAGCCTTGTTTTTGGCGGAATGTTA
TATGGTTTGTATTTTGCATCTCAAAGGAAAACAAAAAACACACCGCTAAAATCAAGTCGATTTTTCACATTAAACAGCAC
AAAAATCTTATCGTCAGAAGCTTATAAACAAGCTCTTTTAGGTGTTATTCTTATTTCTAGTTTTTGTATTGGTACTCTTG
GGTATCGATATATCACGAAACCCAAATGGCAGTTAGATACGTTAGATGTGGGACAAGGTTTAGCAACCTTAATTGTAAAA
GAAGGGAAAGGCGTGTTGTATGATACGGGGCCCGCTTGGCAGAGTGGAATAGGTGGCTCTTCTATGGCGGAATTAGAAAT
ATTGCCTTATCTTCAACGGGAAGGGATTGAACTTGAAACCTTGATTTTAAGCCATGATGATAATGACCATTCAGGCGGTG
CTAAAACGATTTTAACCGCATACTCAGAGATTGAGCTGATTACACCTTCTCGCAAAAGCTATGGCGAAATGCACCGCACT
TTTTGTCTTCAGGGGAAACAATGGCAGTGGCGAGGACTTGATTTTAAAATTCTTTCACCAACGCAAATTACAGACAGGGC
GGAAAATCCGCAATCTTGCGTAATTTTACTAACGGATGGGCAGTATCAGATCCTTTTAACTGGTGATGCTGATGTGGCGA
CAGAAAGATCTTTTGCTGAAAACCTCGGCAAGATTAACGTGTTACAGGTGGGGCATCATGGTAGTAAAACTTCAACAGGC
GAGTTTTTACTGGGACAGACAAAACCGGATATAGCCTTAATTTCAAGTGGACGATGGAATGCGTGGAATTTTCCTCATCC
AACCGTGATTGAACGGTTAAATCGTTATCAAAGTGCGGTCGAAAATACCGCTATTTCAGGTCATATAAGGTTAAATTTTA
CTGAAAAGGGCATTGAAATTGAAAAAGCGAGAGGAGATTTTTCACCTTGGTTTGCCCGTGTAATTGGATTATCCCCGAAA
TAA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(212-478)

Domain of unknown function (DUF4131) (DUF4131)

(35-179)

Metallo-beta-lactamase superfamily (Lactamase_B)

(549-735)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

59.95

100

0.602