NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	I6H44_RS03375	Genome accession	NZ_CP065983
Coordinates	689725..690456 (+)	Length	243 a.a.
NCBI ID	WP_269148708.1	Uniprot ID	-
Organism	Aggregatibacter segnis strain FDAARGOS_987
Function	require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 684725..695456

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6H44_RS03355 (I6H44_03355)	-	685075..686193 (-)	1119	WP_005715668.1	TniQ family protein	-
I6H44_RS03360 (I6H44_03360)	-	686151..687044 (-)	894	WP_005715666.1	TniB family NTP-binding protein	-
I6H44_RS03365 (I6H44_03365)	-	687044..688963 (-)	1920	WP_005715664.1	Mu transposase C-terminal domain-containing protein	-
I6H44_RS03370 (I6H44_03370)	-	688956..689618 (-)	663	WP_005715662.1	heteromeric transposase endonuclease subunit TnsA	-
I6H44_RS03375 (I6H44_03375)	comM	689725..690456 (+)	732	WP_269148708.1	ATP-binding protein	Machinery gene
I6H44_RS03380 (I6H44_03380)	-	690470..691297 (-)	828	WP_005715659.1	divergent polysaccharide deacetylase family protein	-
I6H44_RS03385 (I6H44_03385)	envC	691294..692511 (-)	1218	WP_390879309.1	murein hydrolase activator EnvC	-
I6H44_RS03390 (I6H44_03390)	-	692758..694530 (+)	1773	WP_050540569.1	ShlB/FhaC/HecB family hemolysin secretion/activation protein	-

Sequence

Protein

Download Length: 243 a.a. Molecular weight: 27279.60 Da Isoelectric Point: 9.6978

                                >NTDB_id=515928 I6H44_RS03375 WP_269148708.1 689725..690456(+) (comM) [Aggregatibacter segnis strain FDAARGOS_987]

MLPCHVLSIMPLICNFDSGSIPKPGEISLAHNGVLFLDELPEFERKVLDALRQPLESGEIIISRANAKIQFPARFQLIAA

MNPSPTGHYQGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQNSGDRGESSAMVREKVLKTRAIQLQRAGK

INAHLTSKEIERDCKLEEKDALFLENALTKLGLSVRAYHRILKVSRTIADLEGEKQIHQRHLAEALGYRAMDRLLQKLSK

ASV

Nucleotide

Download Length: 732 bp

                                >NTDB_id=515928 I6H44_RS03375 WP_269148708.1 689725..690456(+) (comM) [Aggregatibacter segnis strain FDAARGOS_987]

ATTCTACCGTGCCATGTATTATCAATCATGCCACTTATTTGTAACTTTGACAGCGGTTCGATTCCAAAACCCGGGGAAAT

CTCCCTAGCACACAATGGCGTGTTGTTTTTGGATGAACTGCCGGAATTCGAACGCAAGGTATTAGACGCGCTCCGCCAGC

CGTTAGAAAGCGGTGAAATCATCATTTCCCGCGCTAATGCCAAGATTCAATTTCCGGCAAGATTTCAGCTGATTGCCGCC

ATGAACCCAAGCCCCACAGGGCATTATCAAGGCACACATAACCGCACGTCACCACAACAAATCATGCGCTATTTAAATCG

TCTGTCCGGCCCCTTTTTAGATCGTTTCGATTTATCTATTGAAGTGCCGTTGTTGCCGCAAGGGAGTCTGCAAAATAGCG

GTGACCGTGGTGAATCCAGTGCAATGGTGAGAGAAAAAGTCTTAAAAACACGCGCTATTCAGCTTCAACGTGCCGGCAAA

ATTAACGCCCATTTAACCAGCAAAGAAATTGAACGGGATTGCAAACTAGAGGAAAAAGATGCGCTATTTTTAGAAAATGC

GCTGACCAAACTCGGACTGTCTGTACGGGCATACCACCGCATACTCAAGGTTTCCCGTACCATTGCGGATTTAGAAGGGG

AAAAGCAAATTCACCAGCGACACTTAGCAGAAGCTCTTGGCTATCGTGCGATGGATAGACTGTTACAGAAGCTCTCTAAA

GCATCTGTGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(4-127)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(137-229)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Haemophilus influenzae Rd KW20	85.232	97.531	0.831
comM	Glaesserella parasuis strain SC1401	80.498	99.177	0.798
comM	Vibrio cholerae strain A1552	65.56	99.177	0.65
comM	Vibrio campbellii strain DS40M4	64.315	99.177	0.638
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	51.867	99.177	0.514
comM	Legionella pneumophila str. Paris	50	94.65	0.473
comM	Legionella pneumophila strain ERS1305867	50	94.65	0.473

Detailed information NTG0515928