Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JC283_RS10195 Genome accession   NZ_CP065926
Coordinates   2167133..2169175 (-) Length   680 a.a.
NCBI ID   WP_274380543.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain SP_9261-1A     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2162133..2174175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC283_RS10180 (JC283_10180) recQ 2162281..2164062 (-) 1782 WP_140241199.1 DNA helicase RecQ -
  JC283_RS10185 (JC283_10185) - 2164072..2165949 (-) 1878 WP_015728743.1 ABC-F family ATP-binding cassette domain-containing protein -
  JC283_RS10190 (JC283_10190) - 2166061..2166876 (+) 816 WP_015728742.1 ZIP family metal transporter -
  JC283_RS10195 (JC283_10195) comA 2167133..2169175 (-) 2043 WP_274380543.1 peptide cleavage/export ABC transporter Regulator
  JC283_RS12880 - 2169099..2169290 (-) 192 WP_197737724.1 cysteine peptidase family C39 domain-containing protein -
  JC283_RS10200 (JC283_10200) - 2169665..2169973 (-) 309 WP_063284913.1 DUF3884 family protein -
  JC283_RS10205 (JC283_10205) - 2170048..2171334 (-) 1287 WP_140241198.1 glycosyltransferase -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 77573.73 Da        Isoelectric Point: 9.8674

>NTDB_id=515333 JC283_RS10195 WP_274380543.1 2167133..2169175(-) (comA) [Staphylococcus pseudintermedius strain SP_9261-1A]
MDFLRRKLRTTVNGTTAYGLVQVADKLGFETVPIKADISLFEIDDVQYPFIVHVKKNNNHFHYYVVIRCDKKYIYIADPV
VNLTKMTYREFKEEWTGVTILLKPTSLYKPIKQDKVRLTYFIPLLLKEKRLIIKIIIISILVNMINILGSYFMKSIIDFY
IPQKLKTWVSMISMALIASYIMQQILSYLQKYFLILLVKTYSINILSPYIKHLFRLPITFFETGRAGDILSRLNDANSIT
DALASTMLSLFLDVTIIVGISIFLYYQSTILFVLILIIIPIYAVIVFGFMNSFERKRIKSMEANATLSSYLMENITGMET
IKALTCEKKCYKQIKYNFSNYYEKTFLLNKLNIKQNVLKKVVQLILNVSILWVGANLVIDNQISIGTLLVFNSLVIYFMN
PIENIMNLQLKLQIAGVANNRLNEIFTVKSEFEKNKLDIKLNQNSSKLIFSNISYGYGYEKEILTDINITIEHNSKVAFI
GESGSGKTTLAKMMVSFFEPSKGKITLGGLDITNINKSVLRQQIIYTPQQTYIFNGTILENLLLGVVKEVTQKDIDSAIK
MAELKSFIDSLPLGLDSVLSSDFSALSGGQRQKIALARALLTNSSILIMDEATSNIDILTERKIINNLMALNKTIIFISH
NLNITQKVDKIFVLAKGKIIEEGSHEFLLKAKGYYSNLIN

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=515333 JC283_RS10195 WP_274380543.1 2167133..2169175(-) (comA) [Staphylococcus pseudintermedius strain SP_9261-1A]
TTGGATTTTCTGAGAAGAAAGTTAAGAACAACAGTAAATGGCACTACAGCATATGGTTTGGTTCAGGTAGCAGATAAGTT
AGGTTTTGAGACAGTTCCTATTAAAGCAGATATATCTTTGTTTGAAATTGATGATGTACAGTATCCTTTTATCGTTCATG
TTAAAAAAAATAACAATCATTTTCACTATTATGTTGTAATTAGATGTGATAAAAAGTATATCTATATAGCTGACCCTGTT
GTTAATTTAACAAAGATGACTTATAGGGAATTTAAAGAAGAGTGGACTGGAGTTACAATCTTATTAAAACCTACATCTTT
ATATAAGCCTATAAAGCAAGATAAAGTTCGTTTAACTTATTTTATACCTTTATTATTAAAAGAAAAAAGATTGATTATAA
AAATAATAATCATTTCCATTTTAGTCAATATGATAAATATTTTAGGTTCATATTTTATGAAGTCAATTATTGATTTTTAT
ATTCCCCAAAAGTTAAAAACATGGGTTAGTATGATTTCCATGGCTTTAATTGCTTCTTACATTATGCAACAAATTCTTAG
TTATTTGCAGAAATATTTTTTGATTTTATTAGTAAAGACATATTCTATAAATATACTTTCACCATACATTAAACATTTGT
TTAGATTACCTATTACTTTTTTTGAAACGGGAAGAGCAGGAGACATACTATCAAGACTTAATGATGCAAATTCAATTACT
GATGCTTTAGCTAGTACCATGCTATCATTGTTTTTAGATGTTACAATAATAGTTGGAATATCTATCTTCCTGTATTATCA
AAGTACTATTTTATTTGTATTAATATTAATTATCATTCCTATTTATGCCGTAATTGTTTTTGGTTTTATGAACTCTTTTG
AACGGAAAAGAATAAAATCTATGGAGGCAAATGCTACTTTGTCTTCTTATTTGATGGAAAATATAACAGGTATGGAGACG
ATAAAAGCACTGACATGTGAAAAGAAATGCTATAAGCAGATAAAATATAATTTTTCGAATTATTACGAAAAAACATTCTT
GTTAAACAAACTAAATATAAAGCAAAACGTTTTGAAAAAGGTTGTTCAATTAATATTAAATGTATCGATTTTATGGGTAG
GCGCTAACCTAGTTATAGATAATCAAATCTCAATTGGAACTTTGCTTGTTTTTAATTCATTAGTGATTTACTTTATGAAT
CCAATAGAAAATATTATGAATTTACAGCTTAAATTACAAATAGCAGGTGTGGCTAATAATCGATTGAATGAAATATTCAC
AGTTAAATCAGAATTTGAAAAGAATAAATTGGATATCAAATTGAACCAAAACTCAAGTAAACTTATATTTTCAAATATTT
CATATGGATATGGGTACGAAAAAGAAATCCTTACAGATATTAATATAACAATAGAACATAATAGTAAAGTAGCCTTTATT
GGAGAGTCTGGATCAGGTAAAACAACTTTGGCGAAAATGATGGTTAGTTTTTTTGAACCTTCAAAGGGTAAAATAACACT
AGGTGGATTGGACATAACAAATATCAATAAATCTGTTTTACGACAGCAGATTATATACACTCCACAACAAACTTATATTT
TTAATGGAACTATACTTGAAAATCTTTTATTAGGGGTAGTTAAAGAGGTTACGCAAAAGGACATAGATAGTGCTATTAAA
ATGGCTGAACTAAAATCCTTTATTGATAGCTTACCACTTGGACTTGATAGTGTATTAAGTTCTGATTTTTCTGCTTTGTC
AGGAGGTCAGCGGCAGAAGATAGCTTTAGCAAGAGCACTATTAACAAATTCTTCTATATTGATAATGGATGAAGCAACGA
GTAATATTGATATACTCACGGAGAGAAAAATTATTAATAATTTGATGGCGTTAAATAAAACTATTATATTTATCTCCCAT
AATCTAAATATAACTCAAAAAGTAGATAAAATATTTGTTTTAGCAAAAGGAAAAATTATAGAAGAGGGCTCACATGAATT
TTTATTAAAAGCAAAAGGTTACTATTCTAACTTAATTAATTAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(2-105)

ABC transporter transmembrane region (ABC_membrane)

(133-401)

ABC transporter (ABC_tran)

(464-614)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

52.577

99.853

0.525
  comA Streptococcus mitis NCTC 12261

52.43

99.853

0.524
  comA Streptococcus gordonii str. Challis substr. CH1

52.283

99.853

0.522
  comA Streptococcus pneumoniae R6

52.135

99.853

0.521
  comA Streptococcus pneumoniae Rx1

52.135

99.853

0.521
  comA Streptococcus pneumoniae D39

52.135

99.853

0.521
  comA Streptococcus pneumoniae TIGR4

51.841

99.853

0.518
  comA/nlmT Streptococcus mutans UA159

48.83

100

0.491