Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JC281_RS09905 Genome accession   NZ_CP065920
Coordinates   2103573..2105186 (-) Length   537 a.a.
NCBI ID   WP_272914040.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain SP_11306-1A     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2098573..2110186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC281_RS09890 (JC281_09890) recQ 2098721..2100502 (-) 1782 WP_143951510.1 DNA helicase RecQ -
  JC281_RS09895 (JC281_09895) - 2100512..2102389 (-) 1878 WP_015728743.1 ABC-F family ATP-binding cassette domain-containing protein -
  JC281_RS09900 (JC281_09900) - 2102501..2103316 (+) 816 WP_015728742.1 ZIP family metal transporter -
  JC281_RS09905 (JC281_09905) comA 2103573..2105186 (-) 1614 WP_272914040.1 peptide cleavage/export ABC transporter Regulator
  JC281_RS12560 (JC281_09910) - 2105143..2105718 (-) 576 WP_187530240.1 cysteine peptidase family C39 domain-containing protein -
  JC281_RS09915 (JC281_09915) - 2106093..2106401 (-) 309 WP_063284913.1 DUF3884 family protein -
  JC281_RS09920 (JC281_09920) - 2106476..2107729 (-) 1254 WP_143951511.1 glycosyltransferase -
  JC281_RS12715 - 2108855..2109232 (-) 378 Protein_1939 ISL3 family transposase -

Sequence

Protein


Download         Length: 537 a.a.        Molecular weight: 60761.84 Da        Isoelectric Point: 9.6810

>NTDB_id=515203 JC281_RS09905 WP_272914040.1 2103573..2105186(-) (comA) [Staphylococcus pseudintermedius strain SP_11306-1A]
MINILGSYFMKSIIDFYIPQKLKTWVSMISMALIASYIMQQILSYLQKYFLILLVKTYSINILSPYIKHLFRLPITFFET
GRAGDILSRLNDANSITDALASTMLSLFLDVTIIVGISIFLYYQSTILFVLILIIIPIYAVIVFGFMNSFERKRIKSMEA
NATLSSYLMENITGMETIKALTCEKKCYKQIKYNFSNYCEKTFLLNKLNIKQNVLKKVVQLILNVSILWVGANLVIDNQI
SIGTLLVFNSLMIYFMNPIENIMNLQLKLQIAGVANNRLNEIFTVKSEFEKNKLDIKLNQNSSKLIFSNISYGYVYEKEI
LTDINITIEHNSKVAFIGESGSGKTTLAKLMVSFFEPSKGKITLGGLDITNINKSVLRQQIIYIPQQTYIFNGTILENLL
LGVVKEVTQKDIDSAIKMVELKSFIDSLPLGLDSVLSSDFSALSGGQRQKIALARALLTNSSILIMDEATSNIDILTERK
IINNLMALNKTIIFISHNLNITQKVDKIFVLAKGKIIEEGSHEFLLKAKGYYSNLIN

Nucleotide


Download         Length: 1614 bp        

>NTDB_id=515203 JC281_RS09905 WP_272914040.1 2103573..2105186(-) (comA) [Staphylococcus pseudintermedius strain SP_11306-1A]
ATGATAAATATTTTAGGTTCATATTTTATGAAGTCAATTATTGATTTTTATATTCCCCAAAAGTTAAAAACATGGGTTAG
TATGATTTCCATGGCTTTAATTGCTTCTTACATTATGCAACAAATTCTTAGTTATTTGCAGAAATATTTTTTGATTTTAT
TAGTAAAGACATATTCTATAAATATACTTTCACCATACATTAAACATTTGTTTAGATTACCTATTACTTTTTTTGAAACG
GGAAGAGCAGGAGACATACTATCAAGACTTAATGATGCAAATTCAATTACTGATGCTTTAGCTAGTACCATGCTATCATT
GTTTTTAGATGTTACAATAATAGTTGGCATATCTATCTTCCTGTATTATCAAAGTACTATTTTATTTGTATTAATATTAA
TTATCATTCCTATTTATGCCGTAATTGTTTTTGGTTTTATGAACTCTTTTGAACGGAAAAGAATAAAATCTATGGAGGCA
AATGCTACTTTGTCTTCTTATTTGATGGAAAATATAACAGGTATGGAGACGATAAAAGCACTGACATGTGAAAAGAAATG
CTATAAGCAGATAAAATATAATTTTTCGAATTATTGCGAAAAAACATTCTTGTTAAACAAACTAAATATAAAGCAAAACG
TTTTGAAAAAGGTTGTTCAATTAATATTAAATGTATCGATTTTATGGGTAGGCGCTAACCTAGTTATAGATAATCAAATC
TCAATTGGAACTTTGCTTGTTTTTAATTCATTAATGATTTACTTTATGAATCCAATAGAAAATATTATGAATTTACAGCT
TAAATTACAAATAGCAGGTGTGGCTAATAATCGATTGAATGAAATATTCACAGTTAAATCAGAATTTGAAAAGAATAAAT
TGGATATCAAATTGAACCAAAACTCAAGTAAACTTATATTTTCAAATATTTCATATGGATATGTGTACGAAAAAGAAATC
CTTACAGATATTAATATAACAATAGAACATAATAGTAAAGTAGCCTTTATTGGAGAGTCTGGATCAGGTAAAACAACTTT
GGCGAAATTGATGGTTAGTTTTTTTGAACCTTCAAAGGGTAAAATAACACTAGGTGGATTGGACATAACAAATATCAATA
AATCTGTTTTACGACAGCAGATTATATACATTCCACAACAAACTTATATTTTTAATGGAACTATACTTGAAAATCTTTTA
TTAGGGGTAGTTAAAGAGGTTACGCAAAAGGACATAGATAGTGCTATTAAAATGGTTGAACTAAAATCCTTTATTGATAG
CTTACCACTTGGACTTGATAGTGTATTAAGTTCTGATTTTTCTGCTTTGTCAGGAGGTCAGCGGCAGAAGATAGCTTTAG
CAAGAGCACTATTAACAAATTCTTCTATATTGATAATGGATGAAGCAACGAGTAATATTGATATACTCACGGAGAGAAAA
ATTATTAATAATTTGATGGCGTTAAATAAAACTATTATATTTATCTCCCATAATCTAAATATAACTCAAAAAGTAGATAA
AATATTTGTTTTAGCAAAAGGAAAAATTATAGAAGAGGGCTCACATGAATTTTTATTAAAAGCAAAAGGTTACTATTCTA
ACTTAATTAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(321-471)

ABC transporter transmembrane region (ABC_membrane)

(2-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

52.886

100

0.529
  comA Streptococcus mitis NCTC 12261

52.7

100

0.527
  comA Streptococcus pneumoniae D39

52.328

100

0.523
  comA Streptococcus pneumoniae R6

52.328

100

0.523
  comA Streptococcus pneumoniae Rx1

52.328

100

0.523
  comA Streptococcus gordonii str. Challis substr. CH1

52.142

100

0.521
  comA Streptococcus pneumoniae TIGR4

51.955

100

0.52
  comA/nlmT Streptococcus mutans UA159

49.168

100

0.495