Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   I7830_RS13230 Genome accession   NZ_CP065795
Coordinates   2593789..2594055 (-) Length   88 a.a.
NCBI ID   WP_103361428.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain GDH8C110P     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2588789..2599055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I7830_RS13200 (I7830_13200) gcvPA 2589329..2590672 (-) 1344 WP_103361424.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  I7830_RS13205 (I7830_13205) gcvT 2590684..2591772 (-) 1089 WP_103361425.1 glycine cleavage system aminomethyltransferase GcvT -
  I7830_RS13210 (I7830_13210) - 2591965..2592453 (-) 489 WP_037588260.1 shikimate kinase -
  I7830_RS13215 (I7830_13215) comGF 2592688..2593122 (-) 435 WP_103361426.1 competence type IV pilus minor pilin ComGF -
  I7830_RS13220 (I7830_13220) - 2593097..2593429 (-) 333 WP_232339591.1 hypothetical protein -
  I7830_RS14380 - 2593593..2593760 (-) 168 WP_232339592.1 hypothetical protein -
  I7830_RS13230 (I7830_13230) comGC 2593789..2594055 (-) 267 WP_103361428.1 competence type IV pilus major pilin ComGC Machinery gene
  I7830_RS13235 (I7830_13235) - 2594313..2594732 (+) 420 WP_232339593.1 YolD-like family protein -
  I7830_RS13240 (I7830_13240) - 2594821..2595318 (+) 498 WP_103361430.1 AAA family ATPase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9521.12 Da        Isoelectric Point: 6.4425

>NTDB_id=514644 I7830_RS13230 WP_103361428.1 2593789..2594055(-) (comGC) [Mammaliicoccus sciuri strain GDH8C110P]
MLIVLLIISILLVIIIPNISKQSETVKSTGCQAQVKMVAGQVEAYTLKHDAKPNSINDLVSDGYINQKQLTCKSGETITL
ENGEVVAH

Nucleotide


Download         Length: 267 bp        

>NTDB_id=514644 I7830_RS13230 WP_103361428.1 2593789..2594055(-) (comGC) [Mammaliicoccus sciuri strain GDH8C110P]
ATGTTAATAGTTCTTCTAATAATAAGTATATTATTGGTGATCATCATACCAAACATTAGCAAGCAATCAGAGACGGTAAA
AAGTACTGGATGTCAGGCTCAAGTGAAGATGGTTGCTGGACAAGTAGAAGCTTATACATTGAAGCACGATGCTAAACCAA
ATTCTATAAATGATTTAGTAAGTGATGGTTATATTAATCAAAAGCAACTGACATGTAAATCAGGTGAAACAATTACACTT
GAAAATGGTGAAGTTGTTGCACATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

62.5

81.818

0.511
  comGC Staphylococcus aureus N315

62.5

81.818

0.511
  comGC Bacillus subtilis subsp. subtilis str. 168

44.706

96.591

0.432
  comYC Streptococcus mutans UA140

50

79.545

0.398
  comYC Streptococcus mutans UA159

50

79.545

0.398
  comYC Streptococcus gordonii str. Challis substr. CH1

47.826

78.409

0.375
  comGC Lactococcus lactis subsp. cremoris KW2

45.833

81.818

0.375