Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   KX728_RS00100 Genome accession   NZ_CP079724
Coordinates   19532..19744 (+) Length   70 a.a.
NCBI ID   WP_219108644.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 14532..24744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS00100 (KX728_00100) comW 19532..19744 (+) 213 WP_219108644.1 sigma(X)-activator ComW Regulator
  KX728_RS00105 (KX728_00105) - 20010..21296 (+) 1287 WP_215805100.1 adenylosuccinate synthase -
  KX728_RS00110 (KX728_00110) tadA 21497..21964 (+) 468 WP_001110101.1 tRNA adenosine(34) deaminase TadA -
  KX728_RS00120 (KX728_00120) - 22153..22596 (+) 444 WP_000701998.1 dUTP diphosphatase -
  KX728_RS00125 (KX728_00125) - 22598..23137 (+) 540 WP_215805101.1 histidine phosphatase family protein -
  KX728_RS00130 (KX728_00130) radA 23151..24512 (+) 1362 WP_084917279.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 70 a.a.        Molecular weight: 8731.18 Da        Isoelectric Point: 8.8047

>NTDB_id=514575 KX728_RS00100 WP_219108644.1 19532..19744(+) (comW) [Streptococcus oralis strain 34]
MLQKFYDRAFVFLKLVEQEYASLGQSCAEWESLHLQFLLYYLIRFKIKSERDFSLYHFRTAYRLYLDKFL

Nucleotide


Download         Length: 213 bp        

>NTDB_id=514575 KX728_RS00100 WP_219108644.1 19532..19744(+) (comW) [Streptococcus oralis strain 34]
ATGCTTCAGAAATTTTATGACCGAGCATTTGTCTTTTTGAAACTAGTTGAACAAGAATATGCCTCTTTAGGCCAGAGTTG
TGCAGAGTGGGAATCACTTCATCTTCAGTTTTTACTATATTACCTAATTCGATTTAAAATTAAAAGTGAAAGGGACTTTT
CTCTATATCACTTTAGAACAGCTTATCGTCTATATTTAGATAAATTTCTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus mitis NCTC 12261

47.143

100

0.471
  comW Streptococcus mitis SK321

47.143

100

0.471
  comW Streptococcus pneumoniae Rx1

44.286

100

0.443
  comW Streptococcus pneumoniae D39

44.286

100

0.443
  comW Streptococcus pneumoniae R6

44.286

100

0.443
  comW Streptococcus pneumoniae TIGR4

44.286

100

0.443