Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   I8N73_RS17830 Genome accession   NZ_CP065791
Coordinates   3619169..3620332 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain LBUM279     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3614169..3625332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N73_RS17800 (I8N73_17800) - 3614433..3614852 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  I8N73_RS17805 (I8N73_17805) comFC 3614926..3615615 (-) 690 WP_199022660.1 phosphoribosyltransferase family protein Machinery gene
  I8N73_RS17810 (I8N73_17810) - 3615621..3615905 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  I8N73_RS17815 (I8N73_17815) comFA 3615963..3617348 (-) 1386 WP_094032535.1 DEAD/DEAH box helicase Machinery gene
  I8N73_RS17820 (I8N73_17820) - 3617457..3618305 (-) 849 WP_003151387.1 DegV family protein -
  I8N73_RS17825 (I8N73_17825) degU 3618403..3619092 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  I8N73_RS17830 (I8N73_17830) degS 3619169..3620332 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  I8N73_RS17835 (I8N73_17835) - 3620555..3621202 (+) 648 WP_199022186.1 YigZ family protein -
  I8N73_RS17840 (I8N73_17840) - 3621207..3622421 (+) 1215 WP_199022187.1 LCP family protein -
  I8N73_RS17845 (I8N73_17845) - 3622511..3623587 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  I8N73_RS17850 (I8N73_17850) tuaH 3623720..3624916 (-) 1197 WP_199022188.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=514576 I8N73_RS17830 WP_007407484.1 3619169..3620332(-) (degS) [Bacillus velezensis strain LBUM279]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=514576 I8N73_RS17830 WP_007407484.1 3619169..3620332(-) (degS) [Bacillus velezensis strain LBUM279]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCCGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951