Detailed information NTG0051451

Bioinformatically predicted

Overview

• Name: comX/sigX
• Type: Regulator
• Locus tag: SSUST1_RS00620
• Genome accession: NC_017950
• Coordinates: 97909..98379 (+)
• Length: 156 a.a.
• NCBI ID: WP_014735269.1
• Uniprot ID: -
• Organism: Streptococcus suis ST1
• Function: activate transcription of late competence genes (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	96836..97699	97909..98379	flank	210

Gene organization within MGE regions

Location: 96836..98379

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSUST1_RS00615 (SSUST1_0111)	-	96836..97699 (+)	864	WP_014735268.1	IS982 family transposase	-
SSUST1_RS00620 (SSUST1_0112)	comX/sigX	97909..98379 (+)	471	WP_014735269.1	sigma-70 family RNA polymerase sigma factor	Regulator

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 19043.97 Da
• Isoelectric Point: 9.2926

>NTDB_id=51451 SSUST1_RS00620 WP_014735269.1 97909..98379(+) (comX/sigX) [Streptococcus suis ST1]
MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLEAQPWLVDEQVQLYCYFKVKFRNRIKDRIRKQESQKR
KFDRMPHEDIHELSHAIQSPGLINDELLMLRGALRDYQKNLSNDQLDKYEKLISGQCFNGRRKMIRDLQIHLKDFR

Nucleotide

• Length: 471 bp

>NTDB_id=51451 SSUST1_RS00620 WP_014735269.1 97909..98379(+) (comX/sigX) [Streptococcus suis ST1]
ATGGAATTCGAAAAAGTGTACGCAAGCGTCAAAGGTATTGTAAACAAGGCTCGAAAAGAGTTTTACATTAAACTATGGGA
TCGAGATGATTGGGAACAAGAAGGAATGATGACCTTGTTTGAATTATTGGAAGCTCAACCGTGGCTAGTTGATGAACAAG
TTCAATTATATTGTTATTTTAAAGTCAAGTTCAGAAATCGAATCAAGGATCGTATCCGCAAACAGGAAAGTCAAAAACGC
AAGTTTGACCGTATGCCACATGAAGATATTCACGAATTATCTCACGCAATACAATCACCGGGATTGATAAACGATGAACT
ATTAATGCTAAGAGGTGCCTTGAGAGATTATCAAAAAAATCTGAGTAATGATCAACTTGATAAATATGAAAAATTAATTA
GCGGACAATGTTTTAATGGTCGCCGTAAAATGATACGTGATTTACAAATTCATTTGAAAGACTTTCGCTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comX/sigX	Streptococcus suis D9	98.718	100	0.987
comX/sigX	Streptococcus suis isolate S10	98.077	100	0.981
comX/sigX	Streptococcus suis P1/7	98.077	100	0.981
comR/comR2	Streptococcus gordonii str. Challis substr. CH1	48.387	99.359	0.481
comR/comR1	Streptococcus gordonii str. Challis substr. CH1	48.387	99.359	0.481
comX/sigX/comX2/sigX2	Streptococcus mitis NCTC 12261	45.098	98.077	0.442
comX/comX2	Streptococcus pneumoniae TIGR4	45.695	96.795	0.442
comX/comX1	Streptococcus pneumoniae TIGR4	45.695	96.795	0.442
comX/comX2	Streptococcus pneumoniae R6	45.033	96.795	0.436
comX/comX2	Streptococcus pneumoniae Rx1	45.033	96.795	0.436
comX/comX1	Streptococcus pneumoniae Rx1	45.033	96.795	0.436
comX/comX2	Streptococcus pneumoniae D39	45.033	96.795	0.436
comX/comX1	Streptococcus pneumoniae D39	45.033	96.795	0.436
comX/comX1	Streptococcus pneumoniae R6	45.033	96.795	0.436
comX/sigX/comX1/sigX1	Streptococcus mitis SK321	44.444	98.077	0.436
comX/sigX/comX2/sigX2	Streptococcus mitis SK321	44.444	98.077	0.436
comX/sigX	Streptococcus mutans UA159	43.226	99.359	0.429
comX/sigX/comX1/sigX1	Streptococcus mitis NCTC 12261	43.791	98.077	0.429
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS315	40.645	99.359	0.404
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS315	40.645	99.359	0.404
comX	Streptococcus sobrinus strain NIDR 6715-7	40.523	98.077	0.397
comX	Streptococcus thermophilus LMG 18311	40.523	98.077	0.397
comX	Streptococcus thermophilus LMD-9	40.523	98.077	0.397
comX/sigX/comX2/sigX2	Streptococcus pyogenes JRS4	40	99.359	0.397
comX/sigX/comX1/sigX1	Streptococcus pyogenes JRS4	40	99.359	0.397
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS8232	40	99.359	0.397
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS8232	40	99.359	0.397
comX	Streptococcus salivarius SK126	39.869	98.077	0.391
comX/sigX	Streptococcus salivarius strain HSISS4	39.869	98.077	0.391
comX/sigX	Streptococcus infantarius subsp. infantarius ATCC BAA-102	38.217	100	0.385