Detailed information NTG0514347

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: STRR_RS08790
• Genome accession: NZ_CP065788
• Coordinates: 1690563..1691663 (-)
• Length: 366 a.a.
• NCBI ID: WP_142350125.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain RR
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1685563..1696663

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STRR_RS08745	-	1685888..1686163 (-)	276	WP_011681681.1	hypothetical protein	-
STRR_RS08750 (STRR_08670)	-	1686175..1686372 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
STRR_RS08755 (STRR_08675)	-	1686621..1687814 (-)	1194	WP_014608740.1	acetate kinase	-
STRR_RS08760 (STRR_08680)	comYH	1687870..1688826 (-)	957	WP_011681684.1	class I SAM-dependent methyltransferase	Machinery gene
STRR_RS08765 (STRR_08685)	comGG	1688871..1689188 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
STRR_RS08770 (STRR_08690)	comYF	1689166..1689603 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
STRR_RS08775 (STRR_08695)	comGE	1689587..1689880 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
STRR_RS08780 (STRR_08700)	comYD	1689852..1690280 (-)	429	WP_257608452.1	competence type IV pilus minor pilin ComGD	Machinery gene
STRR_RS08785 (STRR_08705)	comYC	1690240..1690566 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
STRR_RS08790 (STRR_08710)	comYB	1690563..1691663 (-)	1101	WP_142350125.1	competence type IV pilus assembly protein ComGB	Machinery gene
STRR_RS08795 (STRR_08715)	comGA/cglA/cilD	1691545..1692486 (-)	942	WP_071417491.1	competence type IV pilus ATPase ComGA	Machinery gene
STRR_RS08800 (STRR_08720)	-	1692567..1692929 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 41862.00 Da
• Isoelectric Point: 10.1377

>NTDB_id=514347 STRR_RS08790 WP_142350125.1 1690563..1691663(-) (comYB) [Streptococcus thermophilus strain RR]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKETSLSLM
KESLIRGDRLYQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRDLGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide

• Length: 1101 bp

>NTDB_id=514347 STRR_RS08790 WP_142350125.1 1690563..1691663(-) (comYB) [Streptococcus thermophilus strain RR]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTCATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAACATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGTATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGATCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCAGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (236-356)

• Type II secretion system (T2SS), protein F (T2SSF) (51-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.386	93.443	0.508
comYB	Streptococcus mutans UA159	54.386	93.443	0.508
comYB	Streptococcus gordonii str. Challis substr. CH1	50.877	93.443	0.475
comGB/cglB	Streptococcus mitis NCTC 12261	50.151	90.437	0.454
comGB/cglB	Streptococcus mitis SK321	49.394	90.164	0.445
comGB/cglB	Streptococcus pneumoniae Rx1	49.39	89.617	0.443
comGB/cglB	Streptococcus pneumoniae D39	49.39	89.617	0.443
comGB/cglB	Streptococcus pneumoniae R6	49.39	89.617	0.443
comGB/cglB	Streptococcus pneumoniae TIGR4	49.39	89.617	0.443
comGB	Lactococcus lactis subsp. cremoris KW2	45.455	90.164	0.41