Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   STRR_RS08760 Genome accession   NZ_CP065788
Coordinates   1687870..1688826 (-) Length   318 a.a.
NCBI ID   WP_011681684.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain RR     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1682870..1693826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRR_RS08725 (STRR_08650) proC 1683430..1684200 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  STRR_RS08730 (STRR_08655) - 1684230..1684892 (-) 663 WP_011681679.1 CPBP family intramembrane glutamic endopeptidase -
  STRR_RS08735 (STRR_08660) - 1684989..1685432 (-) 444 WP_011681680.1 hypothetical protein -
  STRR_RS08740 - 1685506..1685844 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  STRR_RS08745 - 1685888..1686163 (-) 276 WP_011681681.1 hypothetical protein -
  STRR_RS08750 (STRR_08670) - 1686175..1686372 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  STRR_RS08755 (STRR_08675) - 1686621..1687814 (-) 1194 WP_014608740.1 acetate kinase -
  STRR_RS08760 (STRR_08680) comYH 1687870..1688826 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  STRR_RS08765 (STRR_08685) comGG 1688871..1689188 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  STRR_RS08770 (STRR_08690) comYF 1689166..1689603 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  STRR_RS08775 (STRR_08695) comGE 1689587..1689880 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  STRR_RS08780 (STRR_08700) comYD 1689852..1690280 (-) 429 WP_257608452.1 competence type IV pilus minor pilin ComGD Machinery gene
  STRR_RS08785 (STRR_08705) comYC 1690240..1690566 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STRR_RS08790 (STRR_08710) comYB 1690563..1691663 (-) 1101 WP_142350125.1 competence type IV pilus assembly protein ComGB Machinery gene
  STRR_RS08795 (STRR_08715) comGA/cglA/cilD 1691545..1692486 (-) 942 WP_071417491.1 competence type IV pilus ATPase ComGA Machinery gene
  STRR_RS08800 (STRR_08720) - 1692567..1692929 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35843.02 Da        Isoelectric Point: 4.7891

>NTDB_id=514343 STRR_RS08760 WP_011681684.1 1687870..1688826(-) (comYH) [Streptococcus thermophilus strain RR]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=514343 STRR_RS08760 WP_011681684.1 1687870..1688826(-) (comYH) [Streptococcus thermophilus strain RR]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682