Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   STMM8_RS07980 Genome accession   NZ_CP065787
Coordinates   1541079..1541597 (-) Length   172 a.a.
NCBI ID   WP_002951905.1    Uniprot ID   A0A0P6V0E7
Organism   Streptococcus thermophilus strain MM8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1536079..1546597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM8_RS07960 (STMM8_07935) - 1537988..1538932 (+) 945 WP_002951901.1 magnesium transporter CorA family protein -
  STMM8_RS07965 (STMM8_07940) - 1539003..1539674 (+) 672 WP_011681622.1 DUF1129 domain-containing protein -
  STMM8_RS07970 (STMM8_07945) - 1539791..1540672 (+) 882 WP_022096695.1 DUF4300 family protein -
  STMM8_RS07975 (STMM8_07950) rpsR 1540798..1541037 (-) 240 WP_002945024.1 30S ribosomal protein S18 -
  STMM8_RS07980 (STMM8_07955) ssb 1541079..1541597 (-) 519 WP_002951905.1 single-stranded DNA-binding protein Machinery gene
  STMM8_RS07985 (STMM8_07960) rpsF 1541609..1541899 (-) 291 WP_002951906.1 30S ribosomal protein S6 -
  STMM8_RS07990 (STMM8_07965) - 1542118..1543032 (+) 915 WP_405385049.1 hypothetical protein -
  STMM8_RS07995 (STMM8_07970) mutY 1543855..1545006 (+) 1152 WP_022096697.1 A/G-specific adenine glycosylase -
  STMM8_RS08000 (STMM8_07975) - 1545215..1545535 (-) 321 WP_002947878.1 hypothetical protein -
  STMM8_RS08005 (STMM8_07980) - 1545668..1545895 (-) 228 WP_042798944.1 hypothetical protein -
  STMM8_RS08010 (STMM8_07985) - 1545882..1546058 (-) 177 WP_022096698.1 hypothetical protein -
  STMM8_RS08015 (STMM8_07990) - 1546059..1546343 (-) 285 WP_002947874.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18680.41 Da        Isoelectric Point: 4.7482

>NTDB_id=514280 STMM8_RS07980 WP_002951905.1 1541079..1541597(-) (ssb) [Streptococcus thermophilus strain MM8]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASTGGSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=514280 STMM8_RS07980 WP_002951905.1 1541079..1541597(-) (ssb) [Streptococcus thermophilus strain MM8]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACCCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAACGTTGGAGGATTTGATAACTCAAATTCATTCGGTGGTGGAGCTTCCA
CTGGTGGTTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P6V0E7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366