Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   KV381_RS03890 Genome accession   NZ_CP079114
Coordinates   975207..975812 (+) Length   201 a.a.
NCBI ID   WP_030623952.1    Uniprot ID   A0ABW2MH57
Organism   Streptomyces sp. WY228     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 970207..980812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV381_RS03860 (KV381_03860) - 970513..972234 (-) 1722 WP_218784563.1 urease subunit alpha -
  KV381_RS03865 (KV381_03865) - 972227..972538 (-) 312 WP_030081324.1 urease subunit beta -
  KV381_RS03870 (KV381_03870) - 972552..972854 (-) 303 WP_030081323.1 urease subunit gamma -
  KV381_RS03875 (KV381_03875) - 972992..973612 (-) 621 WP_193464128.1 TetR/AcrR family transcriptional regulator -
  KV381_RS03880 (KV381_03880) - 973741..974730 (+) 990 WP_218784565.1 ABC transporter permease -
  KV381_RS03885 (KV381_03885) - 974818..975102 (-) 285 WP_218784567.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  KV381_RS03890 (KV381_03890) clpP 975207..975812 (+) 606 WP_030623952.1 ATP-dependent Clp protease proteolytic subunit Regulator
  KV381_RS03895 (KV381_03895) - 975850..976155 (+) 306 WP_030081316.1 hypothetical protein -
  KV381_RS03900 (KV381_03900) - 976714..977184 (+) 471 WP_030081314.1 C40 family peptidase -
  KV381_RS03905 (KV381_03905) - 977245..977892 (-) 648 WP_218784569.1 LysE family translocator -
  KV381_RS03910 (KV381_03910) - 977967..978908 (+) 942 WP_030623946.1 LysR family transcriptional regulator -
  KV381_RS03915 (KV381_03915) - 978968..979399 (-) 432 WP_030081304.1 ATP-binding protein -
  KV381_RS03920 (KV381_03920) - 979636..980502 (+) 867 WP_218784571.1 helix-turn-helix transcriptional regulator -
  KV381_RS03925 (KV381_03925) - 980516..980788 (+) 273 WP_030623939.1 DUF397 domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22144.33 Da        Isoelectric Point: 5.3179

>NTDB_id=514162 KV381_RS03890 WP_030623952.1 975207..975812(+) (clpP) [Streptomyces sp. WY228]
MIRPAARYVLPEFTERTATGTRTLDPYSKLLSERIVFLGTPIDDTAAGDLIAQLMYLEHADPDRPLSLYINSPGGSFQAM
AAVYDTMRFLTCEVETFCLGQAGSYAAALLAAGAKGRRHALPGARVVIQQPALEEPMRGQPSDLEIHARELVRTREMFAA
MLVRHTEQTAERITADIERDTILDAKAALAYGLVDHVVENR

Nucleotide


Download         Length: 606 bp        

>NTDB_id=514162 KV381_RS03890 WP_030623952.1 975207..975812(+) (clpP) [Streptomyces sp. WY228]
ATGATCCGCCCCGCCGCCCGCTACGTACTGCCCGAGTTCACCGAGCGCACCGCGACCGGAACCCGGACGCTGGACCCGTA
CTCCAAGCTGCTGTCCGAGCGGATCGTCTTCCTCGGGACCCCGATCGACGACACGGCGGCGGGCGACCTCATCGCCCAGC
TCATGTATCTGGAGCACGCCGATCCGGACCGGCCCCTGTCGCTCTACATCAACTCCCCCGGCGGCTCGTTCCAGGCGATG
GCGGCGGTCTACGACACGATGCGGTTCCTGACCTGCGAGGTGGAGACCTTCTGCCTGGGGCAGGCCGGTTCGTACGCGGC
GGCCCTGCTGGCGGCCGGGGCGAAGGGGCGGCGACATGCGCTGCCCGGGGCGCGGGTAGTCATTCAGCAGCCCGCACTGG
AGGAGCCGATGCGGGGCCAGCCGTCCGACCTGGAGATCCACGCGCGCGAACTGGTGCGCACCCGCGAGATGTTCGCGGCC
ATGCTGGTCCGGCACACGGAGCAGACCGCGGAGCGCATCACCGCCGACATCGAGCGCGACACCATCCTCGACGCGAAGGC
CGCCCTCGCCTACGGGCTGGTCGACCACGTCGTGGAGAACCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

43.684

94.527

0.413
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

41.885

95.025

0.398
  clpP Streptococcus mutans UA159

39.896

96.02

0.383
  clpP Lactococcus lactis subsp. cremoris KW2

37.629

96.517

0.363
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

37.629

96.517

0.363