Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KV188_RS05825 Genome accession   NZ_CP078508
Coordinates   1220647..1221801 (+) Length   384 a.a.
NCBI ID   WP_039709376.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 8 str. 405     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1215647..1226801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV188_RS05795 (KV188_05795) - 1215757..1216490 (+) 734 Protein_1104 hypothetical protein -
  KV188_RS05800 (KV188_05800) - 1216614..1216802 (-) 189 WP_005599189.1 hypothetical protein -
  KV188_RS05805 (KV188_05805) - 1216836..1217270 (+) 435 WP_005599190.1 factor H binding protein domain-containing protein -
  KV188_RS05810 (KV188_05810) - 1217573..1218823 (+) 1251 Protein_1107 surface lipoprotein assembly modifier -
  KV188_RS05815 (KV188_05815) rfaD 1218883..1219809 (-) 927 WP_039709375.1 ADP-glyceromanno-heptose 6-epimerase -
  KV188_RS05820 (KV188_05820) def 1219949..1220461 (-) 513 WP_005599196.1 peptide deformylase -
  KV188_RS05825 (KV188_05825) dprA 1220647..1221801 (+) 1155 WP_039709376.1 DNA-processing protein DprA Machinery gene
  KV188_RS05830 (KV188_05830) - 1221845..1223851 (-) 2007 WP_039709377.1 OPT family oligopeptide transporter -
  KV188_RS05835 (KV188_05835) - 1224073..1225428 (-) 1356 WP_005599204.1 PTS ascorbate transporter subunit IIC -
  KV188_RS05840 (KV188_05840) - 1225437..1225709 (-) 273 WP_005599206.1 PTS sugar transporter subunit IIB -
  KV188_RS05845 (KV188_05845) secE 1226012..1226425 (+) 414 WP_005602526.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42729.94 Da        Isoelectric Point: 5.2422

>NTDB_id=514043 KV188_RS05825 WP_039709376.1 1220647..1221801(+) (dprA) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
MSQADLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESALAWAEQPNQHLLSLFD
EEYPFLLRQIGTAPPVLFVRGSLSSLSLPQIAIVGSRDFSAYGEYWAGYFSEQLVKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLAEQIVESGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATLNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGAVLTETIEDILQAIQYQLPDQPWQQALFEPPQAVENAQFFTKADVPNKVN
HLAKKLPELTACQQQIVAHISLEPISIDDLAKATSLEVETLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=514043 KV188_RS05825 WP_039709376.1 1220647..1221801(+) (dprA) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
ATGTCTCAGGCTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGGGCGCAGCGCATTGCTCGTCTGTTATCCGAAGT
GGATTTTGCCCAATTTTGCCAATATGACAAACGTCAATTACAACAAATCGGTTGGAACGAGAAACAGATTCAACGTTGGT
TCAATCCGGAAATGCGTTGGATTGAGAGCGCATTGGCGTGGGCGGAGCAACCGAATCAACATTTATTGAGCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATCGGCACCGCACCGCCGGTATTATTTGTGCGAGGTTCGCTAAGTAGTTTGAG
CTTACCGCAAATTGCGATTGTCGGTAGTCGAGACTTTTCCGCCTACGGAGAATACTGGGCGGGCTATTTTAGCGAGCAAT
TGGTTAAACATCATTTGGCGGTTACTAGCGGACTTGCAATCGGCATAGACGGTTTTTGCCATCAGCGAGCGGTAGCGGAA
CAGGGTATTACGATTGCTGTGTTGGGCAGCGGTTTAGATCAAGTCTATCCGGCAAGGCACAAAAAATTGGCGGAGCAAAT
TGTCGAAAGCGGCGGGGCGTTAGTGTCGGAATTTTTTCCGAATCAACCGCCGCTTGCCGAAAATTTCCCTCGTCGTAATC
GCATTATCAGCGGTTTGTCACTCGGTACGTTAGTGGTGGAAGCCACATTAAATAGCGGTTCGCTGATTACCGCCCGTTAT
GCGTTGGAACAAGGGCGAGAAGTGTTTGCATTACCGAATTCGGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGGTTTTAACCGAAACGATAGAGGATATTTTACAGGCAATTCAATATCAACTGCCGGATCAGCCTTGGC
AACAGGCTCTGTTTGAACCGCCACAAGCGGTTGAAAACGCACAATTTTTTACAAAAGCAGATGTGCCGAATAAGGTCAAT
CATCTTGCAAAAAAATTGCCGGAATTGACCGCTTGTCAGCAACAAATTGTGGCGCATATTAGTCTTGAACCGATTTCGAT
TGACGATTTGGCTAAGGCGACTTCATTGGAGGTGGAAACACTGTTAGTCGAGTTACTGGGTTTGGAATTATTAAGTGTGA
TTAAGCAGGTAAGCGGCGGTTATGTCAGACAATAA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(325-380)

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.934

98.698

0.74
  dprA Vibrio campbellii strain DS40M4

46.194

99.219

0.458
  dprA Haemophilus influenzae Rd KW20

49.568

90.365

0.448
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

41.985

100

0.43
  dprA Vibrio cholerae strain A1552

41.985

100

0.43
  dprA Legionella pneumophila strain ERS1305867

37.598

99.74

0.375