Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ES15_RS18680 Genome accession   NC_017933
Coordinates   4042539..4044059 (+) Length   506 a.a.
NCBI ID   WP_014729826.1    Uniprot ID   -
Organism   Cronobacter sakazakii ES15     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4037539..4049059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES15_RS18665 (ES15_3710) - 4039100..4040029 (-) 930 WP_004387276.1 branched-chain amino acid transaminase -
  ES15_RS18670 (ES15_3711) ilvM 4040050..4040307 (-) 258 WP_004387277.1 acetolactate synthase 2 small subunit -
  ES15_RS18675 (ES15_3712) ilvG 4040304..4041950 (-) 1647 WP_014729825.1 acetolactate synthase 2 catalytic subunit -
  ES15_RS20605 ilvL 4042089..4042187 (-) 99 WP_071601137.1 ilv operon leader peptide -
  ES15_RS18680 (ES15_3713) comM 4042539..4044059 (+) 1521 WP_014729826.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ES15_RS18685 (ES15_3714) - 4044139..4044477 (-) 339 WP_004387280.1 DUF413 domain-containing protein -
  ES15_RS18690 (ES15_3715) hdfR 4044585..4045418 (+) 834 WP_104669286.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54928.31 Da        Isoelectric Point: 7.5620

>NTDB_id=51378 ES15_RS18680 WP_014729826.1 4042539..4044059(+) (comM) [Cronobacter sakazakii ES15]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTIVGLPETTVKEARDRVRSALINSGYEFPAKKVTINLAPADLPKEGGR
YDLPIAIALLAASEQLSASHLGEYEFVGELALTGALRGVPGAISAAIEALGCKRKIIVAHDNGPEVGLINKEGCLVAYHL
QEVCAFLEGKTQLECAEPSGFEFREPAGDLGEVIGQPQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGMLSQAGQTG
ESSAQVRERVMVSRERQLARQGKLNAMLDNREIRQFCVLSPEDAQWLEAALIKLGLSVRAWQRLLKVARTIADCEQKQWI
GREHLQEALSYRAIDRMLAHLQNMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=51378 ES15_RS18680 WP_014729826.1 4042539..4044059(+) (comM) [Cronobacter sakazakii ES15]
ATGTCGTTATCAGTTATTCATACCCGTGCTGCGCTTGGGGTTAAGGCGCCGCTCGTGACAGTTGAAGTACATATCAGCGC
CGGGCTGCCCGGCCTGACTATTGTCGGCTTACCGGAAACCACCGTTAAAGAAGCCAGAGATCGCGTACGCAGCGCGCTTA
TCAATAGCGGTTATGAATTTCCGGCTAAAAAGGTAACCATCAATCTGGCACCGGCGGATCTACCTAAAGAAGGTGGGCGA
TATGATTTACCTATCGCCATCGCGCTTCTGGCCGCCTCTGAGCAATTGAGCGCATCCCATCTTGGTGAATATGAATTTGT
AGGTGAGCTGGCGCTTACAGGCGCGCTGAGAGGCGTTCCCGGCGCAATTTCAGCCGCCATCGAGGCTCTGGGTTGTAAAA
GGAAAATTATCGTCGCGCATGATAATGGCCCTGAAGTAGGACTCATCAATAAAGAGGGTTGCCTTGTGGCTTATCATCTA
CAGGAGGTCTGCGCCTTCCTGGAAGGAAAAACACAGCTGGAATGCGCTGAGCCATCCGGCTTTGAATTCAGAGAGCCGGC
GGGAGATCTGGGCGAGGTTATCGGTCAACCACAGGGAAAGCGCGCGCTTGAGTTAACCGCAGCGGGTGGGCATAACCTGC
TTTTTATTGGGCCTCCTGGTACAGGTAAAACCATGCTTGCCAGCAGACTCAATGGGTTACTGCCGCCTCTGAGCGACCAG
GAGGCGCTGGAGAGCGCTGCGATACTCAGCCTGGTCAACCCCGTCTCTTTACACCATCAATGGCGTCAGCGTCCATTCAG
AGCCCCTCACCATAGCGCATCGCTTAACGCCATGGTGGGCGGAGGAGCTATTCCTGCGCCAGGAGAGATCTCACTTGCCC
ATAACGGCGTGCTTTTTCTGGATGAATTACCTGAGTTTGAACGTCGCGTACTGGATGCTTTACGCGAGCCGATTGAATCA
GGGCAAATCCATCTTTCACGAACCAGGGCGAAATTAACCTATCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCCAG
TCCGACAGGGCACTACAAAGGCAATCATAATCGCTGCTCACCGGAGCAAACGCTGCGCTATCTTGGGCGGCTTTCCGGGC
CATTTCTAGACAGGTTTGATCTCTCCCTTGAAATCCCGCTTCCCCCGCCGGGTATGCTTAGCCAGGCAGGACAGACCGGT
GAAAGCAGTGCGCAAGTAAGGGAACGAGTCATGGTTAGCAGAGAACGTCAGCTTGCACGTCAGGGAAAACTCAATGCTAT
GCTGGATAACCGGGAAATACGTCAGTTTTGTGTGCTTAGTCCGGAGGACGCCCAGTGGCTGGAGGCAGCATTAATCAAAC
TGGGGTTGTCGGTTCGCGCCTGGCAGCGTTTACTTAAAGTTGCACGCACAATTGCAGATTGTGAACAGAAACAATGGATT
GGTCGTGAGCATCTTCAGGAGGCACTGAGCTATCGTGCAATAGACAGGATGCTGGCGCATTTACAAAACATGATGGCGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.297

100

0.617
  comM Vibrio cholerae strain A1552

60.558

99.209

0.601
  comM Glaesserella parasuis strain SC1401

59.566

100

0.597
  comM Vibrio campbellii strain DS40M4

60.159

99.209

0.597
  comM Legionella pneumophila str. Paris

47.106

99.012

0.466
  comM Legionella pneumophila strain ERS1305867

47.106

99.012

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.615

100

0.439

Multiple sequence alignment