Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I6G33_RS12815 Genome accession   NZ_CP065721
Coordinates   2670899..2672395 (+) Length   498 a.a.
NCBI ID   WP_008568388.1    Uniprot ID   -
Organism   Stutzerimonas degradans strain FDAARGOS_876     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2665899..2677395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G33_RS12780 (I6G33_12780) xerC 2665904..2666803 (+) 900 WP_102829032.1 tyrosine recombinase XerC -
  I6G33_RS12785 (I6G33_12785) - 2666800..2667498 (+) 699 WP_008568367.1 HAD family hydrolase -
  I6G33_RS12790 (I6G33_12790) sutA 2667563..2667898 (-) 336 WP_008568368.1 transcriptional regulator SutA -
  I6G33_RS12795 (I6G33_12795) - 2667973..2668398 (-) 426 WP_008568369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  I6G33_RS12800 (I6G33_12800) - 2668525..2669841 (-) 1317 WP_008568370.1 ammonium transporter -
  I6G33_RS12805 (I6G33_12805) glnK 2669880..2670218 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  I6G33_RS12810 (I6G33_12810) - 2670603..2670863 (+) 261 WP_102829033.1 accessory factor UbiK family protein -
  I6G33_RS12815 (I6G33_12815) comM 2670899..2672395 (+) 1497 WP_008568388.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6G33_RS12820 (I6G33_12820) - 2672512..2674485 (+) 1974 WP_008568389.1 choline BCCT transporter BetT -
  I6G33_RS12825 (I6G33_12825) - 2674505..2676157 (-) 1653 WP_232249077.1 bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52684.36 Da        Isoelectric Point: 7.5432

>NTDB_id=513501 I6G33_RS12815 WP_008568388.1 2670899..2672395(+) (comM) [Stutzerimonas degradans strain FDAARGOS_876]
MSLAIVHSRAQSGVEAPPVTVEAHLANGLPSLALVGLPETAVKESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPAERLDGLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVYAADHL
LEVAAHFSGTTPLTSYVAEGLLRQVLPYPDLADVQGQLAAKRGLLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIQSVASHGPLAHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GQIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPGGRCRCTPEQIQRYRGKLSGPLLDRIDLHLTVARETTSLNAPAQH
GQSSAEVAAQVADARQLQLRRQGCANAFLDLAGLRQHCRLDGADQQWLEHACERLGLSLRAAHRLLKVSRTLADLDAAAD
ISRQHLAEALQYRPAAQA

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=513501 I6G33_RS12815 WP_008568388.1 2670899..2672395(+) (comM) [Stutzerimonas degradans strain FDAARGOS_876]
ATGTCCCTGGCCATCGTCCACAGCCGCGCACAGAGCGGCGTTGAAGCGCCACCGGTGACCGTCGAGGCGCATCTGGCCAA
CGGCCTGCCCTCGCTGGCGCTGGTCGGCCTACCGGAAACCGCGGTGAAGGAAAGCAAGGATCGCGTGCGCAGCGCCATCC
TCACCTCCGGTTTCGACTTCCCCGCCCGCCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTAGCCATCGCCCTGGGCATTCTCGCGGCGAGCGGTCAGCTACCGGCCGAGCGCCTGGACGGACTCGAATGCCT
GGGCGAGCTGGCGCTTTCCGGGGCGCTGCGGCCGGTACAGGGCGTGTTGCCCGCCGCGCTTGCCGCTCGCGCCGCCGGCC
GCGCGCTGCTGGTGCCGCGCGCCAATGCCGAAGAAGCCAGCCTGGCGTCCGGCCTGACCGTGTATGCCGCCGACCACCTG
CTGGAAGTCGCCGCGCATTTCAGCGGCACCACGCCACTGACGTCCTATGTCGCCGAAGGCCTGCTGCGCCAGGTGCTGCC
CTACCCCGACCTGGCCGACGTGCAAGGCCAACTCGCCGCCAAGCGCGGCCTGCTGGTCGCCGCGGCGGGGGCGCACAACC
TGCTGTTCTCCGGTCCGCCCGGCACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCCGGTCTGCTGCCGCCACTGGACGAG
CAGGAAGCGCTGGAAGTCGCGGCGATCCAGTCGGTGGCCAGCCACGGTCCGCTGGCGCACTGGCCGCAACGGCCGTTCCG
CCAGCCGCACCACAGCGCGTCCGGTCCGGCGCTGGTCGGTGGCGGCAGCCGGCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTTCTCGACGAGCTACCGGAGTTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAGCCGCTGGAATCG
GGCCAGATCGTGATCGCCCGGGCACGCGACAAGGTGCGCTTCCCGGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTATCTCGGCGATCCCGGCGGGCGCTGCCGCTGCACCCCGGAGCAGATCCAGCGCTACCGCGGCAAACTCT
CCGGCCCGCTGCTCGACCGTATCGACCTGCACCTGACAGTCGCGCGCGAAACCACCTCGCTGAACGCACCCGCGCAGCAT
GGCCAGAGCAGCGCGGAAGTGGCCGCACAGGTGGCGGACGCGCGTCAGTTGCAGTTGCGCCGTCAGGGCTGCGCCAATGC
CTTTCTCGATCTAGCCGGCCTGCGCCAGCACTGCCGGCTGGACGGCGCCGACCAGCAATGGCTGGAACACGCCTGCGAAC
GCCTCGGCCTGTCGCTACGCGCTGCGCACCGCCTGCTCAAGGTGTCGCGCACGCTGGCCGACCTGGACGCGGCGGCAGAT
ATATCCCGCCAGCACCTCGCCGAAGCGCTGCAGTACCGCCCCGCCGCCCAGGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.566

99.398

0.562
  comM Vibrio campbellii strain DS40M4

55.96

99.398

0.556
  comM Haemophilus influenzae Rd KW20

55.179

100

0.556
  comM Glaesserella parasuis strain SC1401

54.491

100

0.548
  comM Legionella pneumophila str. Paris

50.395

100

0.512
  comM Legionella pneumophila strain ERS1305867

50.395

100

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.618

100

0.46