Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I6G34_RS07915 Genome accession   NZ_CP065720
Coordinates   1707863..1709359 (-) Length   498 a.a.
NCBI ID   WP_102839550.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain FDAARGOS_877     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1702863..1714359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G34_RS07905 (I6G34_07905) - 1704081..1705718 (+) 1638 WP_102839548.1 bifunctional diguanylate cyclase/phosphodiesterase -
  I6G34_RS07910 (I6G34_07910) - 1705758..1707731 (-) 1974 WP_102839549.1 choline BCCT transporter BetT -
  I6G34_RS07915 (I6G34_07915) comM 1707863..1709359 (-) 1497 WP_102839550.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6G34_RS07920 (I6G34_07920) - 1709396..1709656 (-) 261 WP_013981620.1 accessory factor UbiK family protein -
  I6G34_RS07925 (I6G34_07925) glnK 1710053..1710391 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  I6G34_RS07930 (I6G34_07930) - 1710430..1711746 (+) 1317 WP_102839551.1 ammonium transporter -
  I6G34_RS07935 (I6G34_07935) - 1711869..1713119 (+) 1251 WP_102839552.1 ammonium transporter -
  I6G34_RS07940 (I6G34_07940) - 1713222..1713647 (+) 426 WP_102839553.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  I6G34_RS07945 (I6G34_07945) sutA 1713727..1714056 (+) 330 WP_102839554.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53133.91 Da        Isoelectric Point: 7.9499

>NTDB_id=513457 I6G34_RS07915 WP_102839550.1 1707863..1709359(-) (comM) [Stutzerimonas frequens strain FDAARGOS_877]
MSLAIVHSRAQIGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILSSGFDFPARRITLNLAPADLPKDGGR
FDLSIALGILAASGQLPNERLDKLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVYAAEHL
LEVAAHFNGVTPLEPYVAQGLLRQVQPYPDLADVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIHSVASHSPLEHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPNGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNAPPQT
GQSSAVLAAQVAEARQRQLARQGCANAFLDLAGLRSHCQLGADDQAWLERACERLALSLRAAHRLLKVARTLADLEQAER
ISRQHLAEALQYRPGSQS

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=513457 I6G34_RS07915 WP_102839550.1 1707863..1709359(-) (comM) [Stutzerimonas frequens strain FDAARGOS_877]
ATGTCCCTGGCCATCGTTCATAGCCGCGCGCAGATCGGCGTCGAAGCGCCGGCGGTGACCGTCGAAGCCCATCTGGCCAA
CGGTCTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGATCGCGTGCGCAGCGCCATCC
TCAGCTCCGGCTTCGATTTTCCCGCCCGACGCATCACCCTCAATCTCGCCCCCGCCGATCTGCCCAAGGACGGTGGCCGC
TTCGACCTGTCCATTGCCCTGGGCATTCTTGCCGCCAGCGGCCAGCTGCCCAACGAGCGGCTCGACAAACTGGAGTGCCT
CGGCGAGCTGGCTCTGTCCGGCGCCTTGCGCCCGGTGCAGGGCGTGCTGCCGGCCGCCCTCGCTGCACGTGCCGCCGGCC
GTGCACTGCTGGTGCCACGGGCCAACGCCGAGGAAGCCAGCCTCGCCTCGGGGCTGACCGTCTATGCCGCCGAACACTTG
CTCGAGGTCGCCGCGCACTTCAACGGCGTCACGCCACTCGAGCCCTATGTTGCCCAGGGCCTGCTACGGCAGGTCCAGCC
TTACCCTGACCTGGCCGACGTGCAGGGCCAGCAGGCGGCCAAGCGCGGCCTGCTGATCGCCGCAGCCGGTGCGCACAACC
TGCTGTTTTCCGGGCCACCCGGTACCGGCAAGACGCTGCTGGCCAGCCGTCTGCCCGGCCTGTTGCCACCGCTGGACGAA
CAGGAGGCGCTGGAAGTCGCCGCCATCCATTCGGTGGCCAGCCACAGCCCTCTGGAGCATTGGCCGCAACGCCCATTCCG
CCAGCCCCATCACAGTGCATCAGGGCCGGCGCTGGTCGGTGGCGGCAGCCGCCCGCAGCCGGGTGAAATCACCCTGGCGC
ATCAGGGTGTGCTGTTTCTCGACGAACTGCCGGAGTTCGATCGCAAGGTACTCGAGGTCCTGCGCGAGCCGCTGGAATCC
GGCCATATCGTCATCGCCCGGGCCCGCGACAAGGTGCGTTTTCCGGCGCGCTTTCAGCTCGTCGCGGCAATGAATCCCTG
CCCCTGTGGCTACCTGGGCGACCCAAACGGACGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTACCGCAACAAGCTCT
CCGGGCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTGGCGCGCGAAGCAACCGCCCTCAACGCACCGCCGCAGACC
GGCCAGAGCAGCGCGGTGCTGGCCGCACAAGTCGCCGAGGCACGGCAGCGGCAACTCGCCCGTCAGGGCTGCGCCAACGC
CTTTCTCGATCTGGCCGGCCTGCGCAGCCATTGCCAGCTCGGTGCCGACGACCAGGCCTGGCTGGAACGCGCCTGCGAAC
GCCTGGCGCTGTCGTTGCGCGCCGCGCACCGCCTGCTCAAGGTGGCACGCACCCTCGCCGACTTGGAACAGGCCGAGCGA
ATCAGCCGTCAGCACCTTGCCGAAGCGCTGCAGTACCGCCCCGGCAGTCAAAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.566

99.398

0.562
  comM Vibrio cholerae strain A1552

56.566

99.398

0.562
  comM Glaesserella parasuis strain SC1401

55.378

100

0.558
  comM Haemophilus influenzae Rd KW20

55.09

100

0.554
  comM Legionella pneumophila str. Paris

50.791

100

0.516
  comM Legionella pneumophila strain ERS1305867

50.791

100

0.516
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.47