Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   I6G43_RS08665 Genome accession   NZ_CP065706
Coordinates   1807895..1809874 (-) Length   659 a.a.
NCBI ID   WP_000749717.1    Uniprot ID   A0A428IAW3
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1802895..1814874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS08645 (I6G43_08645) amiF 1803390..1804319 (-) 930 WP_001291316.1 ATP-binding cassette domain-containing protein Regulator
  I6G43_RS08650 (I6G43_08650) amiE 1804330..1805397 (-) 1068 WP_000159698.1 ABC transporter ATP-binding protein Regulator
  I6G43_RS08655 (I6G43_08655) amiD 1805406..1806332 (-) 927 WP_000103934.1 oligopeptide ABC transporter permease OppC Regulator
  I6G43_RS08660 (I6G43_08660) amiC 1806332..1807828 (-) 1497 WP_000759921.1 ABC transporter permease Regulator
  I6G43_RS08665 (I6G43_08665) amiA 1807895..1809874 (-) 1980 WP_000749717.1 peptide ABC transporter substrate-binding protein Regulator
  I6G43_RS08675 (I6G43_08675) - 1810387..1811718 (-) 1332 WP_000390050.1 hemolysin family protein -
  I6G43_RS08680 (I6G43_08680) endA 1811859..1812683 (-) 825 WP_001036766.1 DNA/RNA non-specific endonuclease Machinery gene
  I6G43_RS08685 (I6G43_08685) - 1812724..1812930 (-) 207 WP_000828205.1 DNA-directed RNA polymerase subunit beta -
  I6G43_RS08690 (I6G43_08690) murA 1812917..1814200 (-) 1284 WP_000411923.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I6G43_RS08695 (I6G43_08695) - 1814223..1814453 (-) 231 WP_002892633.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72892.97 Da        Isoelectric Point: 4.8417

>NTDB_id=513241 I6G43_RS08665 WP_000749717.1 1807895..1809874(-) (amiA) [Streptococcus oralis strain FDAARGOS_886]
MKKSRVFVTAGIALLATGVLAACGSSKSSDSTAPKSYGYVYSADPETLDYLISGKQSTKIATSNGIDGLFTNDKYGNLTP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADNKSEALYLAEDSVKGLADYKAGNNKDFSSV
GVKAVDDYTLEYTLNKPEPYWNSKMAYSIFWPLNEEFEKSKGSDFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNEQYW
DKDNVHLDKVTLAYYDGSDQESIERNFTSGAYSYARLYPTSSNYSKVEETYKENIFYTPSGPGIGGLGVNIDRQGYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTSYSAQINGKEGAPRAVRNLFVKPDFVSAGEKTFGDLVTEKMAAYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDIPVDQTAKNYIARIQSFKQSVETVLGEGNVVIDIQQVSKDE
FTNITYYAANAAAEDWDLSGGVGWNPDYEDPSTYLDILKTTNAEQTKTYMGYEGADNAAAAQVGLKEYDKLVDEAAKETS
DLNVRYEKYAAAQAWLTDSSLILPAMSSTGAAPFISRVVPFTASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=513241 I6G43_RS08665 WP_000749717.1 1807895..1809874(-) (amiA) [Streptococcus oralis strain FDAARGOS_886]
ATGAAAAAAAGTAGAGTATTTGTTACAGCAGGGATTGCTTTGCTGGCAACTGGCGTTCTCGCTGCTTGTGGTTCTTCAAA
ATCATCTGATTCAACAGCTCCAAAATCCTATGGTTATGTTTATTCAGCTGACCCAGAAACATTGGATTACCTCATTTCAG
GGAAACAAAGTACCAAAATTGCCACTTCAAATGGTATCGATGGTCTCTTTACAAATGATAAATATGGGAATTTGACTCCT
GCAGTTGCAGAAGACTGGTCAGTCTCAAAAGATGGGTTGACTTATACCTACAAGATTCGTAAAGGTGTCAAATGGATGAC
ATCAGATGGCGAAGAGTATGCTGAAGTGACAGCGAAAGACTTCGTAAATGGCTTGAAACACGCAGCTGATAACAAGTCTG
AAGCACTTTATCTAGCAGAAGATTCAGTTAAAGGTCTAGCTGACTATAAAGCTGGAAACAATAAAGACTTTTCTTCAGTA
GGTGTAAAGGCAGTTGATGATTATACTCTTGAGTATACTTTGAACAAACCTGAACCATACTGGAACTCTAAGATGGCTTA
TTCAATCTTCTGGCCATTGAACGAAGAATTTGAAAAATCAAAAGGATCTGACTTTGCTAAAGCGACTGACCCTACATCAT
TGCTTTACAATGGACCATTCTTGCTGAAAGGTTTGACTGCTAAGTCTTCTATCGAGTTCGCTAAAAATGAACAATACTGG
GATAAAGACAATGTTCATCTTGATAAAGTAACACTTGCTTACTATGATGGTTCAGACCAAGAGTCTATTGAACGTAACTT
TACAAGTGGAGCTTATAGCTATGCCCGTCTTTACCCAACAAGTTCAAACTACTCTAAAGTAGAAGAAACCTACAAGGAAA
ATATCTTCTACACCCCATCAGGACCTGGTATTGGTGGTTTGGGTGTGAATATTGACCGTCAAGGTTACAAATACACTTCT
AAGACAACTGATGAAGAGAAGACTTCTACTAAGAAGGCCCTTCTTAACAAAGACTTCCGTCAGGCCTTGAACTTTGCCTT
TGACCGTACTTCTTACTCAGCACAAATCAATGGTAAAGAAGGTGCTCCTCGTGCCGTTCGTAACCTCTTTGTAAAACCTG
ACTTCGTCTCTGCTGGTGAAAAAACTTTCGGTGACTTGGTAACTGAAAAGATGGCTGCTTACGGTGATGAGTGGAAGAAT
GTAAACTTTGCAGATGGTCAAGATGGACTTTTCAACGCCGATAAAGCCAAAGCCGAATTTGCCAAAGCCAAAACAGCATT
GGAAGCAGAAGGTGTGAAATTCCCTATCCACTTGGATATCCCAGTAGACCAAACTGCTAAAAACTATATCGCACGTATCC
AATCCTTCAAACAATCCGTTGAAACAGTGCTTGGTGAAGGCAATGTAGTCATCGATATCCAACAAGTTTCTAAAGATGAG
TTTACTAATATTACCTACTATGCGGCGAATGCAGCAGCAGAAGACTGGGATCTCTCAGGTGGCGTTGGATGGAACCCAGA
CTATGAAGATCCATCAACTTACCTTGATATCTTGAAAACAACGAATGCTGAACAAACAAAAACATACATGGGTTACGAAG
GTGCAGATAATGCTGCAGCAGCTCAAGTTGGTTTGAAAGAATACGATAAGCTAGTTGATGAAGCTGCTAAAGAAACAAGC
GACTTGAATGTTCGTTATGAAAAATACGCGGCTGCTCAAGCTTGGTTGACAGATAGCTCACTCATCTTGCCAGCTATGTC
ATCAACTGGTGCTGCACCATTCATTTCTCGTGTTGTGCCATTCACAGCATCATACAGTCAATCTGGAGATAAGGGCTCAG
ACGTATACTTCAAGTATATTCAGTTACAAGATAAGGTTGTAACAAAAGCTGACTATGAACAAGCTCGTGAAAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A428IAW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.83

100

0.678
  amiA3 Streptococcus thermophilus LMD-9

67.273

100

0.674
  amiA3 Streptococcus thermophilus LMG 18311

67.121

100

0.672