Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   I6G43_RS08645 Genome accession   NZ_CP065706
Coordinates   1803390..1804319 (-) Length   309 a.a.
NCBI ID   WP_001291316.1    Uniprot ID   A0A3R9S6I9
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1798390..1809319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS08625 (I6G43_08625) - 1798633..1799196 (-) 564 WP_038805800.1 ECF transporter S component -
  I6G43_RS08630 (I6G43_08630) - 1799607..1800110 (-) 504 WP_038805802.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  I6G43_RS08635 (I6G43_08635) trkA 1800510..1801859 (+) 1350 WP_000706817.1 Trk system potassium transporter TrkA -
  I6G43_RS08640 (I6G43_08640) - 1801863..1803302 (+) 1440 WP_001043427.1 TrkH family potassium uptake protein -
  I6G43_RS08645 (I6G43_08645) amiF 1803390..1804319 (-) 930 WP_001291316.1 ATP-binding cassette domain-containing protein Regulator
  I6G43_RS08650 (I6G43_08650) amiE 1804330..1805397 (-) 1068 WP_000159698.1 ABC transporter ATP-binding protein Regulator
  I6G43_RS08655 (I6G43_08655) amiD 1805406..1806332 (-) 927 WP_000103934.1 oligopeptide ABC transporter permease OppC Regulator
  I6G43_RS08660 (I6G43_08660) amiC 1806332..1807828 (-) 1497 WP_000759921.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35044.24 Da        Isoelectric Point: 6.9903

>NTDB_id=513237 I6G43_RS08645 WP_001291316.1 1803390..1804319(-) (amiF) [Streptococcus oralis strain FDAARGOS_886]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGQKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAEVARYKEALKK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=513237 I6G43_RS08645 WP_001291316.1 1803390..1804319(-) (amiF) [Streptococcus oralis strain FDAARGOS_886]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
CGCCAACTTCTTTATCAACAAGGGAGAAACTTTCTCTCTTGTAGGTGAGTCTGGTAGTGGGAAAACAACCATTGGTCGTG
CCATTATTGGTTTAAATAATACCAGTAAAGGAGAGATTATCTTTGATGGCCAGAAAATTAATGGCAAAAAATCTCACAAG
GAATCCTCAGACTTGATTCGTCGTATCCAGATGATTTTTCAGGACCCTGCAGCAAGCTTGAATGAGCGTGCGACGGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTACCACTTGTTTAAAGACGAAGAAGATCGAAAAGAAAAAGTTCAAAAGATGA
TCCATGAAGTTGGACTTTTGAAAGAACACTTGACCCGTTATCCACACGAGTTTTCTGGTGGTCAACGTCAGCGTATCGGG
ATTGCCCGTGCCCTTGTGATGGAACCTGATTTTGTCATTGCAGATGAGCCAATTTCAGCCTTGGACGTATCAGTGCGTGC
GCAAGTTTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGCTTGACTTATCTCTTTATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCGGACCGTATCGCAGTTATTTATAAGGGAGTTATCGTCGAAGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCTGTCCACCCCTACACTCAAGCGCTTCTATCTGCTGTACCGATTCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
GAAAGTTTACGATCCTGACCAACATGACTATGAGACAGACAAGCCATCTATGGTAGAAATTCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCGGAAGTTGCTCGATACAAAGAAGCTCTTAAAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9S6I9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.113

100

0.851
  amiF Streptococcus thermophilus LMG 18311

84.142

100

0.841
  amiF Streptococcus thermophilus LMD-9

83.819

100

0.838