Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   I6G43_RS08660 Genome accession   NZ_CP065706
Coordinates   1806332..1807828 (-) Length   498 a.a.
NCBI ID   WP_000759921.1    Uniprot ID   A0A7T3DYK8
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1801332..1812828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS08640 (I6G43_08640) - 1801863..1803302 (+) 1440 WP_001043427.1 TrkH family potassium uptake protein -
  I6G43_RS08645 (I6G43_08645) amiF 1803390..1804319 (-) 930 WP_001291316.1 ATP-binding cassette domain-containing protein Regulator
  I6G43_RS08650 (I6G43_08650) amiE 1804330..1805397 (-) 1068 WP_000159698.1 ABC transporter ATP-binding protein Regulator
  I6G43_RS08655 (I6G43_08655) amiD 1805406..1806332 (-) 927 WP_000103934.1 oligopeptide ABC transporter permease OppC Regulator
  I6G43_RS08660 (I6G43_08660) amiC 1806332..1807828 (-) 1497 WP_000759921.1 ABC transporter permease Regulator
  I6G43_RS08665 (I6G43_08665) amiA 1807895..1809874 (-) 1980 WP_000749717.1 peptide ABC transporter substrate-binding protein Regulator
  I6G43_RS08675 (I6G43_08675) - 1810387..1811718 (-) 1332 WP_000390050.1 hemolysin family protein -
  I6G43_RS08680 (I6G43_08680) endA 1811859..1812683 (-) 825 WP_001036766.1 DNA/RNA non-specific endonuclease Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55692.04 Da        Isoelectric Point: 9.1164

>NTDB_id=513240 I6G43_RS08660 WP_000759921.1 1806332..1807828(-) (amiC) [Streptococcus oralis strain FDAARGOS_886]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQEKAS
TMDSSVTVDANDTNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYSNLLDIDHTNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNNQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
DIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMIASSAVAGLIGLVISYAIAIPLGSAMARHKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLFVGD
IWMTMLDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=513240 I6G43_RS08660 WP_000759921.1 1806332..1807828(-) (amiC) [Streptococcus oralis strain FDAARGOS_886]
ATGAAGAAATATATTTTTATGCGTGTATTGCGTTCATTGGTGTCTATCTTCTTGGTGACAACCTTGACCTACACGATTAT
CTATACGATGGTTCCTCGAAAACTGATTTTCAAGCAGGATACCAACTATAACAAGATTGCAACGACGCCAGATAAACGGG
ATAACTATGAAAATACCGTTTATGAGCGGATGGGCTATATCGAGTACTACGATACCAAGGAGTTGCAAGAAAAAGCGAGC
ACAATGGACTCATCTGTAACAGTAGATGCCAATGATACAAATAAGGCAATCTACGAAAAATACATCAACCAACTAGGTAA
TGGTTGGACACTCGGTGTATTCTCAGAAAGTGGTCAATTCTATGCCACGCGTGAAATTCCAATTTTTGAACGTGTTTTCA
AATTCTACTCGAACTTGCTCGACATTGATCATACAAACAAGATTCAAGACCCTGAAAATCCAAACTTGGAACGTTATCTT
CGTTTTGAAAATGACCCTGCTATCGGTTGGTCATTGGTTGGTTCAGGTACAAAACATAAATATCTTTTGTATTTCAACAA
TCAATTTCCATTTGTACACCAAAACTTTGTGAACATTAACTTGGGAGACTCTTACCCAACTTATGCAAACACACCAGTGC
TTCAAGTTATCACGCAGGGGCAAGGACAAACCAAGACATCAGAAGTTCAATTCCCTACGGGTAAAAAGACTTCCTCTGTA
GATATTTACTCTCGTACCTACAAGTCACCAAGTCAAGCAGATGCGCGTGAGGTAGCTAACTATGGTAAAGACGATCCATA
TACAGCTACAGAAAGCAATTATCAATATCCATCAATGATTGCAAGCTCGGCTGTTGCTGGTTTGATCGGTTTGGTTATTT
CTTATGCGATTGCCATTCCTCTTGGATCTGCTATGGCTCGCCACAAGAATACTTGGATTGATAGCTTCTCGACAGGTGCT
CTAACCTTCTTGCTTGCCCTTCCAACGATCGCTTTGGTTTACATCGTGCGCTTGATTGGATCATCTATTGGTCTGCCTGA
CTCATTTCCTATCTTGGGGGCTGGAGATTGGCGTTCCTACGTCTTGCCAGCAGTCATTCTAGGTCTATTGGGTGCGCCAA
GTACAGCTATCTGGATCCGTCGTTACATGATCGACTTGCAATCTCAGGACTTCGTACGTTTTGCTCGTGCCAAAGGTTTG
TCTGAAAAAGAAATTTCAAATAAACACATCTTTAAAAATGCCATGGTTCCTTTGGTTTCAGGTATTCCTGGTGCCGTAAT
CGGAGTTATTGGTGGTGCAACATTGACAGAAACGGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTTA
AGGCATCAAACAACTCAATGGTAGTTGGTCTCGTCTTCATCTTCACATGTATTTCTATCTTCTCACTCTTTGTAGGAGAT
ATCTGGATGACCATGCTTGACCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3DYK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

77.108

100

0.771
  amiC Streptococcus thermophilus LMG 18311

76.506

100

0.765
  amiC Streptococcus thermophilus LMD-9

76.305

100

0.763