Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   I6G43_RS00675 Genome accession   NZ_CP065706
Coordinates   147336..147998 (-) Length   220 a.a.
NCBI ID   WP_038805916.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 142336..152998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS00655 (I6G43_00655) rplI 142867..143319 (-) 453 WP_038805913.1 50S ribosomal protein L9 -
  I6G43_RS00660 (I6G43_00660) - 143316..145289 (-) 1974 WP_038805914.1 DHH family phosphoesterase -
  I6G43_RS00665 (I6G43_00665) - 145442..146620 (-) 1179 WP_038805915.1 acetyl-CoA C-acetyltransferase -
  I6G43_RS00670 (I6G43_00670) hpf 146708..147256 (-) 549 WP_000599119.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  I6G43_RS00675 (I6G43_00675) comFC/cflB 147336..147998 (-) 663 WP_038805916.1 ComF family protein Machinery gene
  I6G43_RS00680 (I6G43_00680) comFA/cflA 147995..149293 (-) 1299 WP_038805917.1 DEAD/DEAH box helicase Machinery gene
  I6G43_RS00685 (I6G43_00685) - 149350..149985 (+) 636 WP_038805918.1 YigZ family protein -
  I6G43_RS00690 (I6G43_00690) cysK 150141..151067 (+) 927 WP_038805919.1 cysteine synthase A -
  I6G43_RS00695 (I6G43_00695) tsf 151182..152222 (-) 1041 WP_000808060.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25301.08 Da        Isoelectric Point: 6.8144

>NTDB_id=513179 I6G43_RS00675 WP_038805916.1 147336..147998(-) (comFC/cflB) [Streptococcus oralis strain FDAARGOS_886]
MNCLLCGQSTKSDLTFSHLLLFKNEHNYLCSACDSTFEKIGEDHCPNCMKRGLSTTCQDCKLWCEDGIQVDHKAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFTPVLADELKKYRDYEFVVIPLSPERLLERGFNQVEGLVETAGFSFQDLLGKREEKASSS
KNRSERLATEIPFYIKTEAPLPKKILVIDDIYTTGATINRVKRLFEEAGVLEVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=513179 I6G43_RS00675 WP_038805916.1 147336..147998(-) (comFC/cflB) [Streptococcus oralis strain FDAARGOS_886]
ATGAATTGTTTATTATGTGGCCAGTCAACAAAGAGTGACTTGACATTTAGTCACCTCTTACTGTTTAAGAATGAGCACAA
CTATCTTTGCTCAGCTTGTGATTCTACTTTTGAGAAGATTGGTGAAGACCATTGTCCAAACTGCATGAAAAGAGGGTTGT
CAACAACGTGTCAAGATTGTAAACTTTGGTGTGAAGATGGGATTCAAGTTGATCATAAAGCAATCTTCACCTATAATCAA
GCTATGAAAGACTTCTTTAGTCGATATAAGTTTGATGGGGATTTTCTGCTTAGAAAGGTTTTTACTCCTGTACTTGCAGA
TGAGTTGAAAAAGTATAGAGACTATGAATTTGTGGTAATTCCCCTAAGTCCTGAAAGATTGCTTGAGAGAGGATTTAATC
AGGTTGAAGGTTTGGTTGAGACGGCAGGATTTTCCTTTCAAGATTTACTAGGGAAAAGAGAAGAGAAGGCTAGTTCTTCT
AAGAATCGCTCAGAACGATTAGCTACTGAAATTCCCTTTTATATTAAAACGGAAGCCCCTCTTCCTAAGAAGATTTTGGT
TATTGATGACATCTATACGACAGGGGCGACTATCAATCGTGTGAAGCGACTGTTTGAAGAGGCAGGTGTTTTGGAAGTCA
AAACTTTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(164-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

75

100

0.75
  comFC/cflB Streptococcus mitis NCTC 12261

74.091

100

0.741
  comFC/cflB Streptococcus pneumoniae TIGR4

73.636

100

0.736
  comFC/cflB Streptococcus pneumoniae Rx1

73.636

100

0.736
  comFC/cflB Streptococcus pneumoniae D39

73.636

100

0.736
  comFC/cflB Streptococcus pneumoniae R6

73.636

100

0.736