Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6G45_RS00995 Genome accession   NZ_CP065700
Coordinates   229510..230049 (+) Length   179 a.a.
NCBI ID   WP_002438358.1    Uniprot ID   H5V742
Organism   Atlantibacter hermannii strain FDAARGOS_888     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 230407..232891 229510..230049 flank 358


Gene organization within MGE regions


Location: 229510..232891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G45_RS00995 (I6G45_00995) ssb 229510..230049 (+) 540 WP_002438358.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19380.37 Da        Isoelectric Point: 5.2358

>NTDB_id=513106 I6G45_RS00995 WP_002438358.1 229510..230049(+) (ssb) [Atlantibacter hermannii strain FDAARGOS_888]
MASRGVNKVILVGNLGQDPEVRYLPSGGAVANFTLATSDSWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQQAQGGNQFSGGAQSRPQQQQ
APASSNNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=513106 I6G45_RS00995 WP_002438358.1 229510..230049(+) (ssb) [Atlantibacter hermannii strain FDAARGOS_888]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTATTTGCCAAGTGG
CGGCGCAGTCGCTAACTTCACGCTGGCTACTTCTGACTCCTGGCGCGATAAGCAAACCGGCGAAATGAAGGAACAGACTG
AGTGGCACCGCGTTGTGATGTTCGGCAAACTGGCTGAAGTGGCAGGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCTGGTCAGGAACGCTATACCACCGAGATTAACGTTCCACAAAT
CGGCGGCGTAATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCGCCGGCTGGCGGTGGTCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCGCAGCAAGCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCACGTCCGCAGCAGCAACAG
GCGCCAGCCTCATCTAACAATGAGCCGCCAATGGACTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H5V742

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.196

100

0.732
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.603
  ssb Neisseria meningitidis MC58

46.154

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.111

100

0.464
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.464

100

0.369