Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I6G49_RS05155 Genome accession   NZ_CP065693
Coordinates   1021446..1022966 (-) Length   506 a.a.
NCBI ID   WP_054829705.1    Uniprot ID   -
Organism   Enterobacter asburiae strain FDAARGOS_892     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1016446..1027966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G49_RS05145 (I6G49_05145) hdfR 1020138..1020959 (-) 822 WP_059347429.1 HTH-type transcriptional regulator HdfR -
  I6G49_RS05150 (I6G49_05150) - 1021078..1021416 (+) 339 WP_023309658.1 DUF413 domain-containing protein -
  I6G49_RS05155 (I6G49_05155) comM 1021446..1022966 (-) 1521 WP_054829705.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6G49_RS05160 (I6G49_05160) ilvL 1023308..1023406 (+) 99 WP_001311244.1 ilv operon leader peptide -
  I6G49_RS05165 (I6G49_05165) ilvX 1023493..1023543 (+) 51 WP_166792073.1 peptide IlvX -
  I6G49_RS05170 (I6G49_05170) ilvG 1023546..1025192 (+) 1647 WP_059347431.1 acetolactate synthase 2 catalytic subunit -
  I6G49_RS05175 (I6G49_05175) ilvM 1025189..1025452 (+) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  I6G49_RS05180 (I6G49_05180) ilvE 1025471..1026400 (+) 930 WP_023326297.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54911.84 Da        Isoelectric Point: 6.8203

>NTDB_id=513044 I6G49_RS05155 WP_054829705.1 1021446..1022966(-) (comM) [Enterobacter asburiae strain FDAARGOS_892]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRERVIAAQTRQYARQNKLNARLDNAGIRQFCSLNVEDAGWLEDTLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=513044 I6G49_RS05155 WP_054829705.1 1021446..1022966(-) (comM) [Enterobacter asburiae strain FDAARGOS_892]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGAGCAGGAC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCGGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGTCATGAACTGTCCGAGCCGGAGGAGTGCGATGATGCTATAGCGGATGCTCC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCGGCAGGTGGACACAATCTTC
TGTTAATTGGCCCGCCGGGTACGGGTAAAACAATGCTGGCAAGCAGGTTAAGTGGGTTGCTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCTGCCATATATAGCCTTATCAGTTCGACGTCGTTGCAAAAACAGTGGCGGCGCCGTCCTTTTCG
TTCGCCGCATCATAGCGCTTCATTGACGGCAATGGTTGGCGGCGGGTCTATCCCCGGGCCAGGTGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCTGAGTTTGAGCGCCGCGTGCTGGATGCACTAAGGGAACCCATTGAATCC
GGTGAGATACATATCTCACGCACGCGAGCGAAAATAAGCTATCCCGCGCAGTTTCAGTTAATCGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCGAGCGGGTGATTGCAGCCCAGACGCGGCAGTACGCTCGCCAGAACAAACTGAATGCACG
GCTGGATAATGCCGGGATTCGGCAGTTTTGTTCTCTTAACGTTGAAGATGCGGGATGGCTGGAAGATACGTTAACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAACGTTTGCTGAAGGTGGCCAGAACTATTGCTGACGTGGAGGGATGCACTGACATT
GAGAGAAAGCATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio campbellii strain DS40M4

58.532

99.605

0.583
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439