Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   I6G50_RS00980 Genome accession   NZ_CP065691
Coordinates   166651..167658 (+) Length   335 a.a.
NCBI ID   WP_197908900.1    Uniprot ID   -
Organism   Lactococcus garvieae strain FDAARGOS_893     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 161651..172658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G50_RS00960 (I6G50_00960) - 162143..162850 (+) 708 WP_003135005.1 Bax inhibitor-1/YccA family protein -
  I6G50_RS00965 (I6G50_00965) - 162921..163745 (-) 825 WP_081165018.1 Cof-type HAD-IIB family hydrolase -
  I6G50_RS00970 (I6G50_00970) - 163974..165395 (+) 1422 WP_197908898.1 NCS2 family permease -
  I6G50_RS00975 (I6G50_00975) - 165470..166570 (+) 1101 WP_197908899.1 YdcF family protein -
  I6G50_RS00980 (I6G50_00980) coiA 166651..167658 (+) 1008 WP_197908900.1 competence protein CoiA Machinery gene
  I6G50_RS00985 (I6G50_00985) pepF 167639..169441 (+) 1803 WP_197908901.1 oligoendopeptidase F Regulator
  I6G50_RS00990 (I6G50_00990) - 169441..170142 (+) 702 WP_197908902.1 O-methyltransferase -
  I6G50_RS00995 (I6G50_00995) - 170223..171128 (+) 906 WP_081165004.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 39845.86 Da        Isoelectric Point: 8.1957

>NTDB_id=513002 I6G50_RS00980 WP_197908900.1 166651..167658(+) (coiA) [Lactococcus garvieae strain FDAARGOS_893]
MLVALDEQGKAINILEKPDLQGAFYCPACKSPLRLKRGTIKTPHFAHVSLEGCDSWSEHESAQHLELKLNLYQWFSQKEK
VEIEKYLPEIQQTADLLVNDRLVIEVQCSSLSLQRLVERTENYRKAGYFVLWLQGRDLWLKNSLTSLQKNLLYYSEDYGF
YFWELDLDNQKIRLKSLIHQDLQGRMIYLTEEFDLLRGDIIEILRLPFKAQKKLNIKVPKNEKMRSFIQKQLYHRTPKWL
KIQEKYYQVGKNLLMEDWNKNYWSPPGLNLLTYSFEKDVKETFCQIETSLVDYYQNFYENFEAEGIEILHAPCFYAIIKG
KNKKEDGERNGKKTR

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=513002 I6G50_RS00980 WP_197908900.1 166651..167658(+) (coiA) [Lactococcus garvieae strain FDAARGOS_893]
ATGTTAGTAGCTTTAGATGAACAAGGAAAAGCAATCAATATATTAGAAAAGCCCGATTTGCAAGGAGCTTTCTATTGTCC
TGCTTGTAAATCACCCTTACGTTTGAAACGGGGAACCATAAAAACGCCACACTTTGCTCATGTCTCTCTCGAGGGGTGTG
ATTCATGGAGTGAACATGAATCGGCCCAGCATTTAGAACTAAAGCTAAATTTGTATCAGTGGTTTTCGCAAAAGGAAAAG
GTCGAAATCGAAAAATATCTTCCTGAAATTCAACAAACAGCAGATTTATTAGTCAATGATCGATTGGTGATTGAGGTGCA
GTGTTCCTCTCTTTCATTACAGCGCTTAGTCGAAAGAACGGAGAATTATCGTAAGGCGGGGTACTTTGTTCTATGGCTTC
AAGGCAGGGATTTATGGCTTAAAAACTCATTGACTAGCTTGCAAAAAAATTTGCTCTACTATTCCGAAGACTATGGCTTT
TATTTTTGGGAACTTGATTTAGATAACCAAAAGATACGTTTGAAGTCACTCATTCATCAAGACTTGCAAGGAAGGATGAT
TTACCTGACTGAGGAATTTGATTTGTTGCGTGGAGATATTATTGAAATTCTCCGTCTGCCTTTTAAAGCACAAAAGAAAT
TGAATATAAAAGTTCCCAAAAACGAGAAAATGAGATCCTTTATCCAAAAACAACTGTATCATCGTACTCCAAAATGGCTT
AAGATACAAGAAAAATATTATCAAGTAGGTAAAAACTTATTGATGGAGGACTGGAATAAAAATTACTGGAGTCCGCCTGG
TTTGAATTTATTAACATACAGTTTTGAGAAAGACGTAAAAGAGACCTTTTGTCAAATCGAAACTTCCTTAGTGGACTACT
ACCAAAATTTTTATGAAAATTTTGAAGCGGAAGGAATAGAAATCCTGCACGCCCCGTGCTTCTATGCTATAATTAAGGGT
AAAAATAAAAAAGAAGATGGGGAGCGAAATGGCAAAAAAACGAGATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

53.823

97.612

0.525
  coiA Streptococcus mitis NCTC 12261

43.082

94.925

0.409
  coiA Streptococcus pneumoniae TIGR4

41.824

94.925

0.397
  coiA Streptococcus pneumoniae Rx1

41.824

94.925

0.397
  coiA Streptococcus pneumoniae D39

41.824

94.925

0.397
  coiA Streptococcus pneumoniae R6

41.824

94.925

0.397