Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I6G50_RS00985 Genome accession   NZ_CP065691
Coordinates   167639..169441 (+) Length   600 a.a.
NCBI ID   WP_197908901.1    Uniprot ID   -
Organism   Lactococcus garvieae strain FDAARGOS_893     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 162639..174441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G50_RS00965 (I6G50_00965) - 162921..163745 (-) 825 WP_081165018.1 Cof-type HAD-IIB family hydrolase -
  I6G50_RS00970 (I6G50_00970) - 163974..165395 (+) 1422 WP_197908898.1 NCS2 family permease -
  I6G50_RS00975 (I6G50_00975) - 165470..166570 (+) 1101 WP_197908899.1 YdcF family protein -
  I6G50_RS00980 (I6G50_00980) coiA 166651..167658 (+) 1008 WP_197908900.1 competence protein CoiA Machinery gene
  I6G50_RS00985 (I6G50_00985) pepF 167639..169441 (+) 1803 WP_197908901.1 oligoendopeptidase F Regulator
  I6G50_RS00990 (I6G50_00990) - 169441..170142 (+) 702 WP_197908902.1 O-methyltransferase -
  I6G50_RS00995 (I6G50_00995) - 170223..171128 (+) 906 WP_081165004.1 peptidyl-prolyl cis-trans isomerase -
  I6G50_RS01000 (I6G50_01000) alaS 171382..174000 (+) 2619 WP_197908903.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69585.90 Da        Isoelectric Point: 4.7020

>NTDB_id=513003 I6G50_RS00985 WP_197908901.1 167639..169441(+) (pepF) [Lactococcus garvieae strain FDAARGOS_893]
MAKKRDEIAESLTWDLTTIFKNDEAWEAELAELQEKLESVEQYEGHLLDSAHNLLEITEAELELSQAVEKVYVYASMKHD
QDTQVSLYQEYEAKATNLYAKFSERFAFYEPEFLELTQKDYEKFLEEEPKLKQYAHMFERLFAKKAHVLTQKEEKLLASA
GEIFGAAADTFEIFDNADINLPVVKDDKEEIQLTHGNYISLMESKDRKVRKAAYQALYSNYEQYQHTYAKTLQTNVKVHN
FMAKARGYSSARQAALSNNFIPEKVYDKLLEAVNKHLPLLHRYMRLREQILGLEGDLKMYDVYTPLSNLDYKFNYEAAVQ
KAQEVLGVYGTEYSVRVKKAFDERWIDVEENIGKRSGAYSGGSYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTREN
QPYAYGDYPIFLAEIASTTNENLLTESLLAETEDEKERFAILNHWLDGFRGTVFRQSQFAEFEHDIHKADQEGTVLTSEF
MNNLYAKLNEKYYGLSAKDNPEIQYEWARIPHFYYNYYVFQYATGFAAASYLAENILHNGESAREKYLNYLKAGSSDYPL
AVIAKAGVDMEGSEYLDSAFAVFEKRLSELEKLVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=513003 I6G50_RS00985 WP_197908901.1 167639..169441(+) (pepF) [Lactococcus garvieae strain FDAARGOS_893]
ATGGCAAAAAAACGAGATGAAATAGCTGAAAGTTTAACCTGGGATTTAACAACAATATTTAAAAATGATGAAGCATGGGA
AGCGGAACTAGCAGAGCTCCAAGAAAAATTAGAATCAGTGGAGCAGTATGAAGGCCATCTTCTAGATAGCGCGCATAATT
TATTAGAAATTACTGAGGCAGAGCTGGAACTTTCACAAGCGGTTGAAAAAGTCTACGTTTATGCCTCCATGAAACATGAC
CAAGATACACAAGTAAGTCTTTACCAAGAATATGAGGCTAAAGCAACTAATTTATATGCGAAATTTAGTGAAAGATTTGC
TTTTTATGAACCAGAATTTTTAGAGCTTACTCAAAAAGATTATGAAAAATTCTTGGAAGAAGAACCAAAACTTAAGCAAT
ATGCGCATATGTTTGAGCGTCTATTTGCCAAAAAAGCCCATGTTTTAACCCAAAAAGAGGAAAAACTCCTGGCATCTGCG
GGAGAAATTTTTGGGGCAGCTGCGGACACCTTTGAAATTTTTGACAATGCCGATATTAATCTTCCTGTGGTTAAGGATGA
CAAAGAAGAGATTCAATTGACGCATGGCAACTATATTTCGCTTATGGAAAGCAAGGACCGCAAGGTTCGTAAGGCAGCTT
ACCAAGCGCTTTACAGTAATTATGAACAATATCAGCATACCTATGCTAAAACACTTCAAACAAATGTAAAAGTTCATAAT
TTCATGGCTAAAGCACGGGGGTACAGTTCAGCACGTCAAGCAGCTCTCTCAAATAATTTTATTCCAGAAAAAGTTTACGA
CAAACTTTTAGAAGCTGTAAATAAACATTTGCCCCTTTTACATCGTTATATGCGTCTTCGTGAACAGATTCTTGGTTTGG
AAGGGGATTTGAAGATGTATGATGTCTATACCCCTTTATCTAATCTTGATTATAAATTTAATTATGAAGCTGCTGTTCAG
AAAGCCCAAGAAGTTCTCGGTGTCTATGGTACAGAATACTCCGTTCGGGTAAAAAAAGCATTTGATGAGCGATGGATAGA
TGTTGAGGAAAATATAGGTAAACGGTCAGGGGCTTATTCTGGTGGATCTTATGATACAAATGCCTTCATGCTCTTGAATT
GGCAGGAAACGCTCGATGATTTATTTACGCTCGTCCATGAAATGGGACACAGTATGCACTCGACCTTTACGCGAGAAAAT
CAACCTTACGCCTATGGAGATTATCCAATATTCCTTGCAGAGATTGCTTCAACTACAAATGAAAATCTATTGACAGAAAG
TCTGCTCGCTGAAACTGAAGACGAAAAAGAGCGATTTGCGATTCTTAACCATTGGCTTGATGGGTTCCGTGGTACGGTCT
TTCGCCAAAGTCAGTTTGCAGAGTTTGAGCATGATATACATAAGGCGGATCAAGAAGGAACAGTCTTAACCAGCGAATTT
ATGAATAACCTGTATGCTAAGCTCAATGAAAAATATTATGGTTTATCTGCTAAAGATAATCCAGAAATTCAATACGAATG
GGCACGTATTCCTCACTTCTACTACAATTATTATGTTTTCCAATATGCAACAGGATTTGCAGCTGCAAGTTATCTTGCGG
AAAACATTCTTCATAATGGCGAAAGCGCGCGAGAAAAATACTTAAACTACCTTAAAGCAGGTTCGAGTGATTATCCGCTT
GCTGTAATTGCTAAGGCTGGAGTTGATATGGAAGGTAGTGAATATTTGGATTCAGCCTTTGCTGTTTTTGAAAAACGTTT
GAGTGAACTTGAAAAGTTAGTAGAAAAAGGAGTCCATTTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-179)

Peptidase family M3 (Peptidase_M3)

(201-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

66.057

100

0.662