Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I6G83_RS06045 Genome accession   NZ_CP065640
Coordinates   1308979..1310499 (+) Length   506 a.a.
NCBI ID   WP_054307719.1    Uniprot ID   -
Organism   Serratia rubidaea strain FDAARGOS_926     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1303979..1315499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G83_RS06020 (I6G83_06020) - 1304183..1305109 (-) 927 WP_015962285.1 branched-chain amino acid transaminase -
  I6G83_RS06025 (I6G83_06025) ilvM 1305130..1305396 (-) 267 WP_015962286.1 acetolactate synthase 2 small subunit -
  I6G83_RS06030 (I6G83_06030) ilvG 1305393..1307039 (-) 1647 WP_054307717.1 acetolactate synthase 2 catalytic subunit -
  I6G83_RS06035 (I6G83_06035) ilvL 1307182..1307280 (-) 99 WP_015962288.1 ilv operon leader peptide -
  I6G83_RS06040 (I6G83_06040) - 1307414..1308646 (-) 1233 WP_054307718.1 MFS transporter -
  I6G83_RS06045 (I6G83_06045) comM 1308979..1310499 (+) 1521 WP_054307719.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6G83_RS06050 (I6G83_06050) - 1310526..1310864 (-) 339 WP_054307720.1 DUF413 domain-containing protein -
  I6G83_RS06055 (I6G83_06055) hdfR 1310985..1311812 (+) 828 WP_054307721.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54498.89 Da        Isoelectric Point: 8.8278

>NTDB_id=512447 I6G83_RS06045 WP_054307719.1 1308979..1310499(+) (comM) [Serratia rubidaea strain FDAARGOS_926]
MSLAVIFTRATLGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALLNNGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIPADRLAEHEFLGELALSGALRAVSGAIPAAMAAQQDGRGLILPAENEGEVGLLPKEGTRVATHL
LAVCAFLLGQGELSLAQPPAAPPNANRGDLQDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLPGLLPPLTDQ
EALESVAVASLQHQPAGRLPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRTLDALREPLES
GEIVISRASAKVCFPARIQLIAAMNPSPTGHYQGMHNRTPPQQVLRYLGRLSGPFLDRFDLSIEVPLLPPGTLSKQQEPG
ESSQQVRQRVIAARERQLQRAGKINAILGKREVDRDCPLCDADAHYLETTLLKLGLSVRAWHRILKVARTLADLAGEKHI
ARHHLSEALGYRRMERLLIQLHRSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=512447 I6G83_RS06045 WP_054307719.1 1308979..1310499(+) (comM) [Serratia rubidaea strain FDAARGOS_926]
ATGTCATTGGCGGTTATTTTCACTCGGGCTACGCTGGGCGTTCAGGCGCCGTCGGTGACGGTCGAAGTCCATATCAGCAA
CGGGTTGCCCGGATTAACGCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAGGCGCGCGATCGGGTACGCAGCGCACTGC
TCAACAACGGTTTTACCTTTCCCGCGAAACGCATCACCGTCAACCTGGCGCCGGCGGACCTGCCCAAGGAGGGCGGCCGG
TACGATCTGCCGATCGCTCTGGCGATCCTCGCCGCTTCGGAGCAGATCCCAGCAGATCGGCTGGCCGAACACGAATTTCT
CGGCGAGCTGGCGCTGTCCGGCGCATTGCGCGCCGTCAGCGGCGCCATCCCCGCAGCAATGGCGGCGCAGCAGGATGGCA
GAGGGCTGATCCTGCCTGCAGAAAATGAAGGGGAGGTCGGCCTGCTGCCGAAAGAGGGAACGCGGGTTGCAACGCACCTG
TTGGCCGTCTGCGCCTTTCTGCTTGGCCAGGGTGAACTGTCGCTTGCCCAGCCTCCCGCCGCGCCGCCTAACGCCAACCG
GGGAGACCTGCAGGATATTATCGGCCAGGAACAGGCCAAACGGGCGCTGGAGATCGCCGCCGCCGGCGGTCACAATCTGT
TGCTGCTCGGCCCGCCAGGCACCGGCAAGACCATGCTGGCAAGCCGTCTGCCGGGATTATTGCCGCCGCTAACCGACCAG
GAGGCGCTGGAGAGCGTTGCAGTCGCCAGCCTGCAGCATCAGCCCGCCGGCAGGCTGCCGTGGCGTCAGCGGCCATTCAG
GGCGCCGCACCACAGTGCATCCATGGCGGCACTGGTCGGCGGCGGCTCTCTGCCGCGCCCGGGGGAAATATCCATGGCGC
ACAACGGCGTGCTGTTCCTTGATGAACTCCCCGAATTTGAACGGCGCACGCTGGACGCCCTGCGCGAGCCTTTGGAATCC
GGGGAAATTGTCATTTCGCGCGCCAGTGCCAAAGTCTGCTTCCCGGCGCGAATTCAGCTGATCGCCGCCATGAATCCCAG
CCCGACCGGCCACTATCAGGGCATGCATAACCGAACCCCGCCACAGCAGGTTCTGCGCTATCTGGGCCGGCTTTCCGGGC
CGTTTCTCGACCGGTTCGATTTATCGATTGAAGTCCCCTTGCTGCCGCCCGGTACGCTCAGCAAACAGCAAGAGCCGGGA
GAAAGCAGCCAGCAGGTGCGTCAGCGCGTAATCGCGGCGCGGGAACGGCAATTGCAGCGCGCCGGAAAAATTAATGCCAT
CCTCGGCAAACGCGAAGTGGATCGAGATTGCCCATTGTGCGATGCCGACGCCCACTATCTAGAAACAACCTTGCTTAAGC
TGGGATTATCCGTACGCGCCTGGCATCGCATCCTCAAGGTAGCACGCACGCTGGCGGATTTAGCGGGAGAAAAACATATT
GCCCGCCACCATCTCAGCGAAGCATTAGGCTACCGTCGGATGGAACGCCTGCTGATCCAGCTACATCGCAGCCTGGAATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.613

100

0.656
  comM Vibrio cholerae strain A1552

65.936

99.209

0.654
  comM Glaesserella parasuis strain SC1401

64.694

100

0.648
  comM Vibrio campbellii strain DS40M4

64.94

99.209

0.644
  comM Legionella pneumophila str. Paris

49.407

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.407

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.098

100

0.455