Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   I6G86_RS10755 Genome accession   NZ_CP065637
Coordinates   169632..170072 (-) Length   146 a.a.
NCBI ID   WP_042218182.1    Uniprot ID   -
Organism   Lactococcus garvieae strain FDAARGOS_929     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 164632..175072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G86_RS01115 (I6G86_01115) - 165235..167523 (-) 2289 WP_042218020.1 PBP1A family penicillin-binding protein -
  I6G86_RS01120 (I6G86_01120) - 167599..168468 (+) 870 WP_042218022.1 RluA family pseudouridine synthase -
  I6G86_RS01125 (I6G86_01125) - 168554..169399 (-) 846 WP_042218024.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  I6G86_RS10755 (I6G86_01130) comYF 169632..170072 (-) 441 WP_042218182.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6G86_RS10760 (I6G86_01135) comGE 170130..170456 (-) 327 Protein_184 competence type IV pilus minor pilin ComGE -
  I6G86_RS01140 (I6G86_01140) comGD 170359..170733 (-) 375 WP_042218026.1 competence type IV pilus minor pilin ComGD -
  I6G86_RS01145 (I6G86_01145) comYC 170708..171013 (-) 306 WP_016171026.1 competence type IV pilus major pilin ComGC Machinery gene
  I6G86_RS01150 (I6G86_01150) comGB 171032..172051 (-) 1020 WP_255204098.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6G86_RS01155 (I6G86_01155) comGA 171990..172934 (-) 945 WP_042218031.1 competence type IV pilus ATPase ComGA Machinery gene
  I6G86_RS01160 (I6G86_01160) rpsU 173131..173307 (-) 177 WP_003134539.1 30S ribosomal protein S21 -
  I6G86_RS01165 (I6G86_01165) guaB 173430..174911 (-) 1482 WP_003133714.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16788.34 Da        Isoelectric Point: 8.8685

>NTDB_id=512418 I6G86_RS10755 WP_042218182.1 169632..170072(-) (comYF) [Lactococcus garvieae strain FDAARGOS_929]
MVLEKNKVTAFTLLESLLALLVLVGTFSLFLGMTKMFHEEVKRATTDHTQDWQLFCSLLRSELEGASLDKVENNYLYVRK
HVNLRFGLSSQGDFRKTNANGRGYQPMIHHLKNAKISQEGEQIKIILTFEKGGDRTFLYTFPEKES

Nucleotide


Download         Length: 441 bp        

>NTDB_id=512418 I6G86_RS10755 WP_042218182.1 169632..170072(-) (comYF) [Lactococcus garvieae strain FDAARGOS_929]
ATTGTTCTTGAAAAAAATAAAGTTACAGCCTTTACACTTTTGGAATCACTCCTTGCTTTACTCGTGTTAGTGGGCACTTT
TTCTCTTTTTCTAGGTATGACTAAAATGTTTCATGAGGAAGTGAAACGTGCTACAACAGACCATACCCAAGACTGGCAAC
TTTTTTGTAGTCTACTGAGAAGTGAACTTGAGGGAGCAAGTTTAGATAAGGTAGAAAATAACTATCTTTATGTACGCAAA
CATGTTAACCTAAGGTTTGGCCTTTCCTCTCAAGGGGATTTTCGAAAAACTAACGCGAATGGACGAGGCTATCAGCCCAT
GATTCATCATTTAAAAAATGCAAAAATCAGCCAAGAGGGAGAGCAGATAAAAATTATCTTGACTTTTGAAAAAGGAGGAG
ACCGCACATTTCTTTACACGTTCCCAGAGAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(40-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

50.355

96.575

0.486
  comYF Streptococcus mutans UA159

49.645

96.575

0.479
  comGF Lactococcus lactis subsp. cremoris KW2

49.64

95.205

0.473
  comGF/cglF Streptococcus pneumoniae Rx1

40.845

97.26

0.397
  comGF/cglF Streptococcus pneumoniae R6

40.845

97.26

0.397
  comGF/cglF Streptococcus pneumoniae TIGR4

40.845

97.26

0.397
  comGF/cglF Streptococcus pneumoniae D39

40.845

97.26

0.397
  comGF/cglF Streptococcus mitis NCTC 12261

38.732

97.26

0.377
  comGF/cglF Streptococcus mitis SK321

38.028

97.26

0.37