Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | SIR_RS18975 | Genome accession | NC_022246 |
| Coordinates | 1892876..1893466 (-) | Length | 196 a.a. |
| NCBI ID | WP_021003318.1 | Uniprot ID | T1ZFX8 |
| Organism | Streptococcus intermedius B196 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1887876..1898466
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SIR_RS20255 | - | 1891255..1891576 (+) | 322 | Protein_1794 | transposase | - |
| SIR_RS18965 (SIR_1806) | - | 1891649..1892306 (-) | 658 | Protein_1795 | CPBP family intramembrane glutamic endopeptidase | - |
| SIR_RS18970 (SIR_1807) | - | 1892311..1892865 (-) | 555 | WP_021003317.1 | DNA-3-methyladenine glycosylase I | - |
| SIR_RS18975 (SIR_1808) | ruvA | 1892876..1893466 (-) | 591 | WP_021003318.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| SIR_RS18980 (SIR_1809) | - | 1893728..1894234 (+) | 507 | WP_021003319.1 | helix-turn-helix domain-containing protein | - |
| SIR_RS18985 (SIR_1810) | - | 1894218..1894727 (+) | 510 | WP_041787616.1 | RDD family protein | - |
| SIR_RS18990 (SIR_1811) | hexB | 1894873..1896819 (-) | 1947 | WP_021003321.1 | DNA mismatch repair endonuclease MutL | Machinery gene |
| SIR_RS18995 (SIR_1812) | brsR | 1897061..1897501 (+) | 441 | WP_041787618.1 | LytTR family DNA-binding domain-containing protein | Regulator |
| SIR_RS19000 (SIR_1813) | - | 1897498..1897956 (+) | 459 | WP_021003323.1 | DUF3021 domain-containing protein | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21601.97 Da Isoelectric Point: 5.1033
>NTDB_id=51165 SIR_RS18975 WP_021003318.1 1892876..1893466(-) (ruvA) [Streptococcus intermedius B196]
MYEYLKGIITKITAKYIVLEVNAIGYILHVANPYAYSGHLHQEAKVYVHQVVREDAELLYGFSTEEEKQLFLSLISVSGI
GPVSALAIIAADDNTGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVAADGPAESKAPVQTVDNQELEEAMEAML
ALGYKAAELKEIKKFFEGTTDTAENYIKSALKMLVK
MYEYLKGIITKITAKYIVLEVNAIGYILHVANPYAYSGHLHQEAKVYVHQVVREDAELLYGFSTEEEKQLFLSLISVSGI
GPVSALAIIAADDNTGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVAADGPAESKAPVQTVDNQELEEAMEAML
ALGYKAAELKEIKKFFEGTTDTAENYIKSALKMLVK
Nucleotide
Download Length: 591 bp
>NTDB_id=51165 SIR_RS18975 WP_021003318.1 1892876..1893466(-) (ruvA) [Streptococcus intermedius B196]
ATGTACGAATATCTAAAAGGAATTATTACCAAAATCACAGCTAAATACATTGTTTTGGAAGTCAATGCTATTGGGTACAT
ACTTCACGTGGCCAACCCCTATGCTTACTCAGGTCATCTTCATCAGGAAGCCAAGGTCTATGTGCACCAGGTGGTGAGAG
AAGACGCGGAGCTTCTATATGGTTTTTCGACTGAGGAGGAGAAGCAACTCTTTCTCAGCTTGATTTCAGTCTCAGGTATT
GGTCCTGTGTCTGCTTTGGCTATTATTGCTGCAGATGATAATACTGGCTTAGTGCAAGCCATTGAGCAGAAAAACATCAC
CTACCTGACCAAGTTTCCTAAGATTGGCAAGAAGACAGCCCAACAGATGGTACTGGACTTAGAAGGCAAAGTAGTGGCTG
CAGATGGTCCGGCAGAAAGCAAGGCGCCCGTTCAGACTGTGGATAATCAGGAGCTGGAGGAAGCCATGGAAGCCATGCTG
GCTCTGGGATACAAGGCTGCTGAACTTAAGGAAATCAAGAAATTCTTTGAAGGCACAACTGATACAGCTGAAAATTATAT
CAAGTCAGCTCTCAAGATGTTGGTGAAATAG
ATGTACGAATATCTAAAAGGAATTATTACCAAAATCACAGCTAAATACATTGTTTTGGAAGTCAATGCTATTGGGTACAT
ACTTCACGTGGCCAACCCCTATGCTTACTCAGGTCATCTTCATCAGGAAGCCAAGGTCTATGTGCACCAGGTGGTGAGAG
AAGACGCGGAGCTTCTATATGGTTTTTCGACTGAGGAGGAGAAGCAACTCTTTCTCAGCTTGATTTCAGTCTCAGGTATT
GGTCCTGTGTCTGCTTTGGCTATTATTGCTGCAGATGATAATACTGGCTTAGTGCAAGCCATTGAGCAGAAAAACATCAC
CTACCTGACCAAGTTTCCTAAGATTGGCAAGAAGACAGCCCAACAGATGGTACTGGACTTAGAAGGCAAAGTAGTGGCTG
CAGATGGTCCGGCAGAAAGCAAGGCGCCCGTTCAGACTGTGGATAATCAGGAGCTGGAGGAAGCCATGGAAGCCATGCTG
GCTCTGGGATACAAGGCTGCTGAACTTAAGGAAATCAAGAAATTCTTTGAAGGCACAACTGATACAGCTGAAAATTATAT
CAAGTCAGCTCTCAAGATGTTGGTGAAATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Streptococcus pneumoniae TIGR4 |
84.772 |
100 |
0.852 |
| ruvA | Streptococcus pneumoniae R6 |
84.772 |
100 |
0.852 |
| ruvA | Streptococcus pneumoniae D39 |
84.772 |
100 |
0.852 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
41.346 |
100 |
0.439 |