Detailed information NTG0511619

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: KU511_RS03030
• Genome accession: NZ_CP077928
• Coordinates: 567083..568087 (+)
• Length: 334 a.a.
• NCBI ID: WP_001005764.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain 196
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 562083..573087

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KU511_RS02995 (KU511_02990)	mreD	562757..563287 (+)	531	WP_001259927.1	rod shape-determining protein MreD	-
KU511_RS03000 (KU511_02995)	rplU	563523..563831 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
KU511_RS03005 (KU511_03000)	-	563837..564157 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
KU511_RS03010 (KU511_03005)	rpmA	564169..564453 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
KU511_RS03015 (KU511_03010)	obgE	564675..565967 (+)	1293	WP_000496098.1	GTPase ObgE	-
KU511_RS03020 (KU511_03015)	-	565980..566435 (+)	456	WP_000368902.1	ACT domain-containing protein	-
KU511_RS03025 (KU511_03020)	ruvA	566449..567051 (+)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
KU511_RS03030 (KU511_03025)	ruvB	567083..568087 (+)	1005	WP_001005764.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
KU511_RS03035 (KU511_03030)	queA	568089..569114 (+)	1026	WP_031928192.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
KU511_RS03040 (KU511_03035)	tgt	569137..570276 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
KU511_RS03045 (KU511_03040)	yajC	570295..570555 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37703.98 Da
• Isoelectric Point: 5.0832

>NTDB_id=511619 KU511_RS03030 WP_001005764.1 567083..568087(+) (ruvB) [Staphylococcus aureus strain 196]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDDESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=511619 KU511_RS03030 WP_001005764.1 567083..568087(+) (ruvB) [Staphylococcus aureus strain 196]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACT
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTGGGCACAGGTATTGATGATGAAAGTGCTATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTTGCAAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGGCCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515