Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KU511_RS03025 Genome accession   NZ_CP077928
Coordinates   566449..567051 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain 196     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 561449..572051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU511_RS02985 (KU511_02980) - 561597..561716 (+) 120 WP_000840600.1 hypothetical protein -
  KU511_RS02990 (KU511_02985) mreC 561915..562757 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  KU511_RS02995 (KU511_02990) mreD 562757..563287 (+) 531 WP_001259927.1 rod shape-determining protein MreD -
  KU511_RS03000 (KU511_02995) rplU 563523..563831 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  KU511_RS03005 (KU511_03000) - 563837..564157 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  KU511_RS03010 (KU511_03005) rpmA 564169..564453 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  KU511_RS03015 (KU511_03010) obgE 564675..565967 (+) 1293 WP_000496098.1 GTPase ObgE -
  KU511_RS03020 (KU511_03015) - 565980..566435 (+) 456 WP_000368902.1 ACT domain-containing protein -
  KU511_RS03025 (KU511_03020) ruvA 566449..567051 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  KU511_RS03030 (KU511_03025) ruvB 567083..568087 (+) 1005 WP_001005764.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  KU511_RS03035 (KU511_03030) queA 568089..569114 (+) 1026 WP_031928192.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  KU511_RS03040 (KU511_03035) tgt 569137..570276 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  KU511_RS03045 (KU511_03040) yajC 570295..570555 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=511618 KU511_RS03025 WP_000271547.1 566449..567051(+) (ruvA) [Staphylococcus aureus strain 196]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=511618 KU511_RS03025 WP_000271547.1 566449..567051(+) (ruvA) [Staphylococcus aureus strain 196]
ATGTACGCGTATGTCAAAGGTAAGTTAACGCATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425